Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04177 ATGTTGCTTCGAATTGACACAAATTGTTTAGTTCCACTTGCACATCATCATGCGTTTCCTCATAAAATTGAACCGCCGAAAAACTCCGTCGTCCCAACATTGACATTGACAACAACAAGTAGTTGTCGAGAGTGTCAATTTGTGATTCATTATCACAACAACGATGATGATAAGACAACAACAATAAGAAGAAGTTCAAATTGGCAGCAGCAGCAGCAGCAGCGGCGGCGGCATTGTCATTCAGGGACGGGGGAGACTGTCCCTGTCTCCGAATTGGAACTGCAGGAAGGTCGTATGGCGGTTTCATCTTTTCTTCAACAAATGGGTGTATCGGTCGAAGAATCTGAATCAATCGCATCAAACTCCCCATCCTATCTCAACATGTTAATTGAAGGTGTTAGGGATTTGGAGCAGTTATCTTCTTCTATGAATGTGTTCAACTCGAACTTCAACTACAAAGATAAGATTCTTCACATTGCATCTCTCAAAGGTGACAAAGGAAAACTAGCTTACTTAGAGAGTCTTGGCTTCACACTCTCTTCCTCTATGAATGTTGCCAGATATATATCCTCTTCATCTGCTCACAACAACACTCTTCCATCACTCATAAACAAGGTTACTTCTATCAAACAACTCCTCTTTAATCATCCTCATCATGATAACCATCAATTACTTATCAAGAATATTCGCCTTATCATGTGCCACTTATCGATTTCAATAGATGAAGATATGCAACACACTTTCTCATTTTTCGAAAAGGTTCAAGCAAAGCGTGGAGGTTTAAATATTCTTGCTTCTCAAGATGTTGCTTTCCGTTGCTTCATCGAATCATTTCCTCGTATACTTTTGTTATCACTAAATAATCACATCTCACCTATACTGGATTTTCTACAAAATATTGGGATCCCTGCAGATCGTATTCCAAACATAATATTGGCTTTTCCTCCTATTCTGCTTTGGAATGTTCCACTCCTCAAAACTAGAGTTCGAGCCTTGAACCAGATTGATGGTGTGGATAAAGATTATGCCAAGTTGATGCTAAAATATCCATGGGTTCTATCTACAAGCATTCAAGAGAACTATAAGGAGGTCCTTTTCTTTTTCTATTCCGTGAAGGTTCCAAAGACATGGATAGACCATGCAATCAAAAGACAACCTCAACTATTGGGTTGTTCAACTAGCAAGCTGAAGTTGATGGTGGATCAGTTTGCCGAACTAGGAGTTCAAAAGAAAAAGTTGTATCGGGTTATCACTAGAAGTCCTCAGCTATTATTAAAGAAGCCCGAAGACTTTCAACAGGTTGTTATGTTCTTTGAAAATATGGGTTTTGATAAAGAAAATATTGGGAAAATACTTGCTCGCTGCCCTGAAATTTTTGCCAGCAGCATTAGTAAAACATTACAAAGGAAGATTGAGTTCCTTAGTAGAATTGGTGTTTCTAAAGCTTACATTCCTGTGGTTATCAGAAAGTATCCAAAACTACTTGTGTCTGACATTGACAAAAGCTTACCTCAACGGATAGTGTACTTTATAAAGCTAGGGCTTTCAGAGAAGGACATTGCATTTATGGTCACTAAATTTTCTCCTATACTTGGGTACAGCATAAAGGAAAAGGATGTTTTGAGGCCAAAAATAGAATTTCTGGTGAACACAATGAAGAGGCCAGTAAAAGAAGTGGTCAGCTACCCTAGGTATTTTAGCTATTCACTAGAAAAGAAGATAAAACCAAGATATTGGGTTCTGAAAGGAAGGAATATCGAATGTAGCTTAAAGGATATGCTGGGGAAAAATGATGAAGAATTTGCTGCTAAATTTATGGGTGTTGGAAGGAATTCAGCTCATGACAGGCTGTAA 1854 0.3846 MLLRIDTNCLVPLAHHHAFPHKIEPPKNSVVPTLTLTTTSSCRECQFVIHYHNNDDDKTTTIRRSSNWQQQQQQRRRHCHSGTGETVPVSELELQEGRMAVSSFLQQMGVSVEESESIASNSPSYLNMLIEGVRDLEQLSSSMNVFNSNFNYKDKILHIASLKGDKGKLAYLESLGFTLSSSMNVARYISSSSAHNNTLPSLINKVTSIKQLLFNHPHHDNHQLLIKNIRLIMCHLSISIDEDMQHTFSFFEKVQAKRGGLNILASQDVAFRCFIESFPRILLLSLNNHISPILDFLQNIGIPADRIPNIILAFPPILLWNVPLLKTRVRALNQIDGVDKDYAKLMLKYPWVLSTSIQENYKEVLFFFYSVKVPKTWIDHAIKRQPQLLGCSTSKLKLMVDQFAELGVQKKKLYRVITRSPQLLLKKPEDFQQVVMFFENMGFDKENIGKILARCPEIFASSISKTLQRKIEFLSRIGVSKAYIPVVIRKYPKLLVSDIDKSLPQRIVYFIKLGLSEKDIAFMVTKFSPILGYSIKEKDVLRPKIEFLVNTMKRPVKEVVSYPRYFSYSLEKKIKPRYWVLKGRNIECSLKDMLGKNDEEFAAKFMGVGRNSAHDRL 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04177 617 FunFam Mitochondrial transcription termination factor family protein 393 609 - -
Trre4g04177 617 SMART mt_12 485 516 IPR003690 GO:0003690|GO:0006355
Trre4g04177 617 SMART mt_12 449 480 IPR003690 GO:0003690|GO:0006355
Trre4g04177 617 SMART mt_12 343 374 IPR003690 GO:0003690|GO:0006355
Trre4g04177 617 SMART mt_12 379 409 IPR003690 GO:0003690|GO:0006355
Trre4g04177 617 SMART mt_12 556 587 IPR003690 GO:0003690|GO:0006355
Trre4g04177 617 SMART mt_12 521 555 IPR003690 GO:0003690|GO:0006355
Trre4g04177 617 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Trre4g04177 617 SMART mt_12 414 444 IPR003690 GO:0003690|GO:0006355
Trre4g04177 617 Gene3D Transcription termination factor 3, mitochondrial 395 611 IPR038538 -
Trre4g04177 617 PANTHER CGI-12 PROTEIN-RELATED 169 407 IPR003690 GO:0003690|GO:0006355
Trre4g04177 617 MobiDBLite consensus disorder prediction 66 86 - -
Trre4g04177 617 Pfam mTERF 294 602 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04177 Trre-Chr4 50452373 50459762 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre4g04177 mTERF 4e-94 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04177 K15032 - gmx:100802127 714.146