Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04176 ATGTTGAAGAGAGAACAATGTGACCACACTAAACATGATTCCAGCTTCTCTCATTGGAAGATTCTTGTTGGTCCTTCTGATTGGGAAGATTATTCCAAAGGAAAGGAAGGATCTACAAGATATAGGATTCACAACCTACCACAAGATTCCGGTCCCGGAGTTTATGAGCTTGGAGTAGCTATAACAACTAGTGGTTTGGGGCGTGAAATTTTCAAGCTTACTAGTGACCCTCGTCGCGTAGTTGTGGTTTATCTTGGAAAAGCTGACAATGTGAGAACAAGACTCCAATGTTATGGTAGAAATGGAGCTCATTTGGGTAACAGTTGTTCTTCATTTGAATCGTCTGATCAAATGGGTCGCTCATTGTTTCACGAAATATTTTTTCAAGGCTTCCCAATTGTGTATAGATGGGCTCCTATGCAGACCAAGGGAGATGCCTTGCAAACAGAATCTCAACTGCTAACTACATTTGATTATGCATGGAATACAATTAATAATGGTAAGCGTCGGCCCGAAGATATTCTTCAAATGCTCAACAAAATTTCTTCAGGTTCAAGAACATTATCAGATGTGGCCAAATCACTGATACCCTTCACTCAAAAGAAAATAGGGATACCAATTAATTCAAGCAAGTTGCCTATGACAGATAACAAATCAGACGAAGCAGACAATGGTAACTACAATTTCCTCTCTCGCGTGTTCAAATTCAACCGTTCGCGTCCTAAGATAGTTCAGGATACAACTGATTGCGCCATTGAGAATAATGGTAAAATTTGTGGAGTTATTTTGGATGATGGTTCTATTTGTACGAAGTTGCCGGTCAAAAAAAGAGTTAGGTGTCTTGAACATAAGGGAATGAGAATAAGAAGATCCAAGTCAGAATCAGAAACTGTTATTGAGAGTTCTGTGGATGAGAGTATCACTATCACCAAAACCATTATATGTGGAGTTATTATGGAAAATGGATCCACATGTAGAAGAGAACCAGTTAAAGGAAGAAAAAGATGTCATGAACATAAAGGGAAGAGAATTCGTGCATCTGTTCCTATAAATCAGATATAA 1062 0.3861 MLKREQCDHTKHDSSFSHWKILVGPSDWEDYSKGKEGSTRYRIHNLPQDSGPGVYELGVAITTSGLGREIFKLTSDPRRVVVVYLGKADNVRTRLQCYGRNGAHLGNSCSSFESSDQMGRSLFHEIFFQGFPIVYRWAPMQTKGDALQTESQLLTTFDYAWNTINNGKRRPEDILQMLNKISSGSRTLSDVAKSLIPFTQKKIGIPINSSKLPMTDNKSDEADNGNYNFLSRVFKFNRSRPKIVQDTTDCAIENNGKICGVILDDGSICTKLPVKKRVRCLEHKGMRIRRSKSESETVIESSVDESITITKTIICGVIMENGSTCRREPVKGRKRCHEHKGKRIRASVPINQI 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04176 353 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 311 347 IPR038909 GO:0003677|GO:0006355
Trre4g04176 353 Pfam GIY-YIG domain-containing protein 16 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04176 Trre-Chr4 50447028 50449336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04176 1 346 HRT Transcription Factor Family AT5G56780 42.149 1.27e-91 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Trre4g04176 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04176 - - lang:109350609 419.083