Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04162 ATGGAAAATGTTAAAGATCCATCGATCTACCGCAATCCTGTCATATTGCAGAGTGAGGACTTAACAAAGTATATATTGGAGACTGCTGTTTACCCTAGAGAGCCAGAACCTCTCAAAGAGCTGAGGAAAGCCACTGAGAATCATCCTTGGGGTTTCATAGCTACTTTACCTGAGGCTGGTCAACTAATCAGTATACTTTTGAAGCTGTTGAATCCTAAAAAGACAATTGAAATTGGAGTTTTTACTGGATACTCTCTTCTTCTAACTGCACTCAACATTCCGGATGATGGAAAGATCACAGCTATAGATATTGATAGGAAAACTTATGAAATTGGATTACCAGTCATAAAAAAAGCTGGAGTGGAACACAAGATTGATTTCATTGAGTCTCCAGCTCTACCAATTTTGGATAAACTATTAGAAGATCCATCAAATGAAGGAACATTTGACTTTGCTTTCATTGATGCTGACAAAGAGAACTATGTGAACTATCATGACAAACTCATAAAACTAGTCAAGGTTGGTGGATTACTTGTATATGACAATACTCTATGGGGTGGACGTGTTGTTTGGCCTGAAGAGAAAATTCCACAACATTCCAAATCAGGAACAATAGCAGCAATTGAATTCAACAAAAAAATTAGAGATGATTCTCGTGTTGAATTTTCTCTTACTTCTATAGGGGATGGACTCAGTATCTGCAGGCGCATTTTCTGA 717 0.3752 MENVKDPSIYRNPVILQSEDLTKYILETAVYPREPEPLKELRKATENHPWGFIATLPEAGQLISILLKLLNPKKTIEIGVFTGYSLLLTALNIPDDGKITAIDIDRKTYEIGLPVIKKAGVEHKIDFIESPALPILDKLLEDPSNEGTFDFAFIDADKENYVNYHDKLIKLVKVGGLLVYDNTLWGGRVVWPEEKIPQHSKSGTIAAIEFNKKIRDDSRVEFSLTSIGDGLSICRRIF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04162 238 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 14 237 IPR002935 GO:0008171
Trre4g04162 238 CDD AdoMet_MTases 76 180 - -
Trre4g04162 238 Gene3D Vaccinia Virus protein VP39 8 238 IPR029063 -
Trre4g04162 238 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 18 236 IPR029063 -
Trre4g04162 238 PANTHER O-METHYLTRANSFERASE-RELATED 12 237 - -
Trre4g04162 238 Pfam O-methyltransferase 28 237 IPR002935 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04162 Trre-Chr4 50329897 50332252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04162 15 238 Monolignol Biosynthesis Gene Families AT4G26220 62.946 6.99e-105 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04162 K00588 - gmx:100800911 426.017