Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04161 ATGGTGGAGAAGGGCGCTGCAGGTAGAAAAGAGGAAGTTGTCACCCGTGAGTACACCATCAACCTCCACAAGCGTCTTCATGGATGCACCTTCAAAAAGAAGGCACCAAAAGCTATCAAGGAGATAAGAAAGTTTGCACAAAAAGCCATGGGCACTAACGACGTTAGGGTCGATGTCAAGCTCAACAAGGCTATTTGGAGCCAGGGAATTAGAAGTGTACCTAGAAGGATCAGGGTACGCATTGCTCGCAAGAGGAATGACGACGAAGACGCCAAGGAAGAATTGTACTCTCTTGTCACAGTGGTTGAAATTCCCAAGGAAGAGCTAAAAGGTTTGGGCACCAAGGTCATAGATGATGAAGATTGA 366 0.4672 MVEKGAAGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTNDVRVDVKLNKAIWSQGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVVEIPKEELKGLGTKVIDDED 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04161 121 PANTHER 60S RIBOSOMAL PROTEIN L31 3 120 IPR000054 GO:0003735|GO:0005840|GO:0006412
Trre4g04161 121 Pfam Ribosomal protein L31e 12 93 IPR000054 GO:0003735|GO:0005840|GO:0006412
Trre4g04161 121 SMART Ribosomal_L31e_2 11 94 IPR000054 GO:0003735|GO:0005840|GO:0006412
Trre4g04161 121 SUPERFAMILY Ribosomal protein L31e 12 93 IPR023621 -
Trre4g04161 121 CDD Ribosomal_L31e 10 93 IPR000054 GO:0003735|GO:0005840|GO:0006412
Trre4g04161 121 FunFam 60S ribosomal protein L31 7 120 - -
Trre4g04161 121 ProSitePatterns Ribosomal protein L31e signature. 55 69 IPR020052 GO:0003735|GO:0005840|GO:0006412
Trre4g04161 121 Gene3D - 9 121 IPR023621 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04161 Trre-Chr4 50325865 50327151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04161 8 121 Cytoplasmic Ribosomal Protein Gene Family AT4G26230 83.333 2.36e-67 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04161 K02910 - gmx:100499742 214.542