Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04149 ATGATGATCGGAGAACACAATCGATCAAATCCAACGGTGCATATTCCTCCATGGCCAAATCACGACGATCCAACGTCTGAAATTTACTCCTCTTATTTCCCCGACGATAGCAATGCCGGCGCCGGAGATTACTCTCCGTACTATCTACGTGAAGCAATGGCGGCGCTGCAGCGTTATCTTCCGTCAAACGAGTTCGATGCTGTCGACGGCGATTCTGATTCAGAATCTCCGGCTGATTCTCCGGTGGACGCTTTTACATGCGATCATTTTCGTATGTACGAGTTCAAGATAAGAAGATGCTCACGTGGAAGATCACATGACTGGACGGAGTGTCCGTACGCACATCCCGGAGAAAAAGCACGCCGTCGTGATCCGAGAAAGTTTCATTACTCCGGTACGGCGTGTCCTGATTTTCGTAAAGGAAACTGTAAAAAAGGTGACGCGTGTGAATACGCGCATGGTGTTTTCGAGTGTTGGCTTCATCCAGCTCGTTACCGTACTCAGCCATGCAAAGACGGTACTAGCTGTCGCCGCCGTGTTTGTTTCTTCGCTCACACACCGGAACAGATTCGTCTCAATGTTAACAGTCCACCTCCACGTAGTCTTAACTCGCCGGATTCATACGACGGTTCTCCGTTACGACAAATGGCGTTATCATCATTACCGTTCATGTCTTCTCCGGTTTCAACCACTCCACCGGAGTCACCGTCACCACCGATGTCTCCGATGGCTCAGTCGCTGAGTAAATCTCTCGGCTCGAGTTCGATCAACGAGATGGTGGCTTCTTTACGTAATCTGCAGCTTGGAAAATTGAAATCTATACCTTCTATGCCGGTTAATAGAAACATTTCAATCGGGTCGGGTTTCGGGTCACCTAGAGGTTCTGTGCTTCGACCCGGTTTTTGCAGTCTTCCAACTACACCAACTCAAGTTACTGGACCGGGTTCGGGTCGGGTTGGATATTTTGATCTTTGGGATCAGAGTTGTGAGGAGGAACCTATGATGGAGAGAGTTGAATCTGGGAGGGATATAAGGGCTAAGATGTTTGAGAAATTAAGCAAAGAAAATTCATTGAAAAATTCGGATTCGGGTGGTGATTATTTTTGGGAGTGTGAATAG 1119 0.479 MMIGEHNRSNPTVHIPPWPNHDDPTSEIYSSYFPDDSNAGAGDYSPYYLREAMAALQRYLPSNEFDAVDGDSDSESPADSPVDAFTCDHFRMYEFKIRRCSRGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQIRLNVNSPPPRSLNSPDSYDGSPLRQMALSSLPFMSSPVSTTPPESPSPPMSPMAQSLSKSLGSSSINEMVASLRNLQLGKLKSIPSMPVNRNISIGSGFGSPRGSVLRPGFCSLPTTPTQVTGPGSGRVGYFDLWDQSCEEEPMMERVESGRDIRAKMFEKLSKENSLKNSDSGGDYFWECE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04149 372 Gene3D - 130 192 - -
Trre4g04149 372 MobiDBLite consensus disorder prediction 192 211 - -
Trre4g04149 372 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Trre4g04149 372 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Trre4g04149 372 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 154 IPR000571 GO:0046872
Trre4g04149 372 MobiDBLite consensus disorder prediction 223 249 - -
Trre4g04149 372 MobiDBLite consensus disorder prediction 1 34 - -
Trre4g04149 372 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872
Trre4g04149 372 FunFam Zinc finger CCCH domain-containing protein 66 87 155 - -
Trre4g04149 372 PANTHER UNKEMPT FAMILY MEMBER 52 363 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04149 Trre-Chr4 50223419 50224731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04149 85 191 C2H2 Transcription Factor Family AT5G12850 72.897 5.29e-56 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre4g04149 zf-CCCH 1.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04149 - - aprc:113867365 563.533