Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04130 ATGAAGAATCAAAATAGCTTAATTCTAGATTTTCTCTTTCTCATTCTCATTCTCCATTTTACTACAACAAAAGCTGCTTTTGGTGTTGGTGTAGGTGTTGGGGGTGGAGTTGTTTGGATAGGGGGTGGAAATAACAACAACAATAATCAAAACCCAAAATCCTATGAATCTCCAACATCTAAAATGGATTCAGCTTATTCAGTTCTACAAACATGGAAATCTTCAATCACTGATGACCCTTTAAAGATTCTAGATTCTTGGGTTGGTTCAAATGTTTGTTCATACAAAGGAATTTTCTGTGCTAATCCTGAAAATGGAATAGCTTCTACAACAGCTTCTCCTTCAGTAGTTGTTGTAGCAATAGATCTAAACCATGCAAATCTTCAAGGAACATTTGTAAAAGAACTATCTTTACTCACTGATATGACACTTTTTCATCTCAACAGTAACAGATTCAGTGGAACAGTTCCTGAAACATTTAAAGATCTTGTTTCTCTTCAAGAGTTAGATATAAGCAATAATCAACTTTCAGGTTCTTTTCCTTTGGTTACTTTGTATATGCCAAGTCTCATGTACTTGGATATAAGATTCAACTTTTTCTCAGGTTCATTACCTCAAGAACTTTTCAACAAGAATCTTGATGCTATATTTCTCAACAATAATCAATTTGAAGGTGAAATTCCTACAAATTTAGGTAACTCACCTGCTTCTGTGATTAACTTAGCTAACAACAAATTGAGTGGAAATATTCCAGCTAGTTTTGGTTTCATGGGATCAAAGATAAAAGAGATTTTGTTTCTGAATAATCAGTTAACTGGTTGTATACCAGAAGGAGTTGGACTTTTTACTGAAATGGAAGTTCTTGATGTGAGTTTCAATTCATTGATGGGTCATTTACCTGATACATTATCTTGTTTACAGAATATTGAAGTGCTTAATTTGGCTCATAATCAGCTTTCTGGAGAATTATCTGATATAATCTGTTCTTTGAGAAGTTTGGCTAATTTAACTGTTGCTTATAATTTCTTTTCTGGGTTTAGTCAACAATGCTCAAAGCTGAATTTTAGGAATGTTGGTTTTGATTTTTCACTTAATTGTATTCCTGGGAGGAACATGCAGAGACCTCAACCTGAATGTTCCATGATCCCAGGTGGAAGCTTAAGTTGTCTCAGAATTCCAACACCTAAACCTCTTGTTTGTGGTTCTATGTTTGTAAGTAACTCTAAGAACACTGATTCCACTTCACAATCACATTCTCCTTGA 1263 0.3413 MKNQNSLILDFLFLILILHFTTTKAAFGVGVGVGGGVVWIGGGNNNNNNQNPKSYESPTSKMDSAYSVLQTWKSSITDDPLKILDSWVGSNVCSYKGIFCANPENGIASTTASPSVVVVAIDLNHANLQGTFVKELSLLTDMTLFHLNSNRFSGTVPETFKDLVSLQELDISNNQLSGSFPLVTLYMPSLMYLDIRFNFFSGSLPQELFNKNLDAIFLNNNQFEGEIPTNLGNSPASVINLANNKLSGNIPASFGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMEVLDVSFNSLMGHLPDTLSCLQNIEVLNLAHNQLSGELSDIICSLRSLANLTVAYNFFSGFSQQCSKLNFRNVGFDFSLNCIPGRNMQRPQPECSMIPGGSLSCLRIPTPKPLVCGSMFVSNSKNTDSTSQSHSP 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04130 420 SUPERFAMILY L domain-like 66 353 - -
Trre4g04130 420 Gene3D Ribonuclease Inhibitor 234 359 IPR032675 -
Trre4g04130 420 FunFam Leucine-rich repeat extensin-like protein 1 66 233 - -
Trre4g04130 420 PRINTS Leucine-rich repeat signature 306 319 - -
Trre4g04130 420 PRINTS Leucine-rich repeat signature 166 179 - -
Trre4g04130 420 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 52 407 - -
Trre4g04130 420 Pfam Leucine rich repeat N-terminal domain 64 100 IPR013210 -
Trre4g04130 420 Gene3D Ribonuclease Inhibitor 63 233 IPR032675 -
Trre4g04130 420 Pfam Leucine Rich Repeat 165 179 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04130 Trre-Chr4 49967273 49968535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04130 55 391 Leucine-rich Repeat extension Gene Families AT3G24480 47.522 5.35e-102 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04130 - - psat:127117995 691.804