LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre4g04119	ATGAAGACAAAGACGCCATTGAAGCAGCTCAAGCTTTCTGTTCCTGCTCAACAAACACCCATCACTTCTTTCCTGACTGCAAGTGGTACATTCCATGATGGAGATCTGCTCTTGAACCAGAAAGGGATGCGTCTCATTTCTGAAGAAAAGGAATCAAGGCCTTCAGATGCTAAGGATCTCGACTTTGACTTCACATTGGACGACCTTGAGACCGTCAAAGTAATCGGAAAAGGCAGCGGTGGTGTTGTGCAGCTCGTTCGCCATAAGTGGCTCGGAAAGTTGTTTGCCTTAAAGGCCATTCAGATGAATGTACAAGTGGATATTCGTAAACAGATTGTCCAGGAACTGAAAATAAACCAAGCATCGCAGTGTCCACATGTTGTAGTTTGCTACCACTCATTCTATAATAATGGAGTTATATCTCTTGTATTAGAATACATGGACCGTGGTTCTCTCGTAGATGTAATCAGACAAGTTAATACAATTCTGGAACCATATCTTGCTGTGGTTTGTAAGCAGGTGTTACAGGGTCTTGTTTACTTGCACAACGAAAGACATGTGATACATAGGGACATCAAACCATCCAATCTTTTAGTAAATCACAAAGGGGAAGTGAAGATTACCGATTTTGGCGTTAGTGCTATGCTGGCAAGCACAATGGGCCAAAGAGATACATTTGTTGGAACGTATAATTACATGTCGCCAGAAAGAATCAGTGGGAGTACTTATGATTACAGCTGTGACATCTGGAGTTTAGGGATGGTAGTACTCGAGTGTGCCATAGGACGGTTTCCTTATATACAATCTGAAGATCAGCAAGCATGGCCTAGTTTCTATGAGCTTTTGCAAGCAATTGTCGAAAGTCCTCCACCTTCTGCTCCACCTGATCAATTCTCTCCTGAGTTCTGTTCATTTGTGTCATCCTGCATAAAAAAGGATCCTCGCGAAAGATCAACATCATTGGAGCTTTTGGATCATCCTTTCATAAAAAAGTTTGAAGATAAAGATCTAGATCTTGGAATTTTAGTAGGTGGTTTGGAACCTCCTGTAAATTTTCCTAGATAA	1065	0.415	MKTKTPLKQLKLSVPAQQTPITSFLTASGTFHDGDLLLNQKGMRLISEEKESRPSDAKDLDFDFTLDDLETVKVIGKGSGGVVQLVRHKWLGKLFALKAIQMNVQVDIRKQIVQELKINQASQCPHVVVCYHSFYNNGVISLVLEYMDRGSLVDVIRQVNTILEPYLAVVCKQVLQGLVYLHNERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASTMGQRDTFVGTYNYMSPERISGSTYDYSCDIWSLGMVVLECAIGRFPYIQSEDQQAWPSFYELLQAIVESPPPSAPPDQFSPEFCSFVSSCIKKDPRERSTSLELLDHPFIKKFEDKDLDLGILVGGLEPPVNFPR	354

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre4g04119	354	SMART	serkin_6	69	329	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre4g04119	354	ProSitePatterns	Protein kinases ATP-binding region signature.	75	98	IPR017441	GO:0005524
	Trre4g04119	354	Pfam	Protein kinase domain	70	329	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre4g04119	354	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	15	331	-	-
	Trre4g04119	354	Gene3D	Transferase(Phosphotransferase) domain 1	150	342	-	-
	Trre4g04119	354	CDD	PKc_MAPKK_plant_like	70	333	-	-
	Trre4g04119	354	SUPERFAMILY	Protein kinase-like (PK-like)	66	338	IPR011009	-
	Trre4g04119	354	FunFam	Mitogen-activated protein kinase kinase 6	39	148	-	-
	Trre4g04119	354	FunFam	Mitogen-activated protein kinase kinase 6	150	348	-	-
	Trre4g04119	354	ProSiteProfiles	Protein kinase domain profile.	69	329	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre4g04119	354	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	187	199	IPR008271	GO:0004672\|GO:0006468
	Trre4g04119	354	Gene3D	Phosphorylase Kinase; domain 1	38	148	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre4g04119	Trre-Chr4	49851952	49856827	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre4g04119	1	354	MAP Kinase Kinase Gene Family	AT5G56580	83.662	0.0	623

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Trre4g04119		Pkinase	3.1e-66	CL0016