Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04102 ATGACAAAATCTAAAATGTTCATTCCAATCTTGTTTTTCTTTTTCACCTATGCAAATTCTCAACAATCTCAATTATACAATGAAGAACATGAAATCCTAATGAAAATAAAAAAGCACTTTCAAAATCCATTATTCCTAAGTCATTGGAATACATCAAACACTTCTTATCATTGTTCATATCCAGAAATCACTTGCAAAAATGATTCAATCATTTCACTTTCAATGATCAACACAAACATAACACAAACACTTCCACCTTTTCTATGTGAACTCAAAAACCTTACTTACATTGATTTTCAATACAATTACATACCAAATGAGTTTCCAACATCACTTTACAATTGTTCCAAGCTTCAACATCTCGATCTTTCGCAGAACTATTTCGTCGGTAACATTCCGAACGACATCGATAGGTTGGCCAATCTGGAGTTTCTTAACCTCGCCGGAAACAACTTTTCAGGTGATATTCCAATGAGTATTGGAAACTTGAAGAACTTGAAAAGTCTTCAACTTTATCAGTGTCTTTTTAATGGTACTATTCCTGATGAAATTGGTAACTTGTTGAATCTTGAAACATTGTTAATGTTCTCATATAGTATGTTACCTAGAACAAAGTTGCCATCTAGTTTTACTAAGTTGAAAAATTTAAGGATATTTGATATGCATGACTCTAACTTGGTTGGAGAAATTCCTGAAACAATTGGTGAAATGATGGCTTTGGAGGTTTTGGATTTATCAGGAAATTTTTTGAGTGGAAAAATTCCAAATGGCTTATTCACTTTGAAAAATTTGAGCACACTTTATCTTTACAAGAATAATCTTTCTGGAGATATACCTGATGTGGTTGAAGCGTTCGAGTTAACTAGCTTGGATCTTTCGATGAATAATCTCACCGGAAAAATACCAGGCGGTTTTGGAAGATTTGAAAAGCTAAAGTACTTGAGCTTGTATGTGAATCGATTGTCTGGAGAAGTACCGGAAAGCATCGGTAATCTTCGGTTTCTGACTGATTTTCTTGTTTTTCAGAACAACTTATCAGGTAATCTTCCTCAAGGTTTTGGTAAGTTTTCTAAACTTGAAACTTTTCAGATTGGATCTAATAGTTTCAATGGAAAGCTACCACAGAATTTGTGCTATCATGGAAGGTTAGTTGGTTTAACTGCTAATGACAATAATCTAAGCGGCGAGTTGCCGAAATCTTTAGGTAGTTGTAGCAGTTTGCAGATAGTGAGTGTTGAGAATAATGAGTTTTCTGGTAACATTCCTGATGGTTTATGGACATCTATGAACTTGTCAATAATTAGGATAAGTGAGAACATGTTCACGGGCCAGCTTCCCGAAAGATTGGCTCGGAATCTTTCGGAATTAGCCGTAAGTTACAATCGGTTTTCAGGTAGAATTCCGAACGGAGTTTCTTCTTGGAAGAATGTAGTGATGTTCAATGCTAGTAACAACTTTTTCAATGGAAGTATTCCGTTGGAGTTAACATCGCTTCCTCGGCTATCAACTCTTTTGCTCGATCAGAACCAACTCACCGGTCGAATTCCATCGGATATCATCTCATGGAAATCGCTACAAAGATTAGATTTGAGCCACAATCAACTCTCTGGAGATATACCGGATGCAATTTGTCGGTTACCTTCTCTAGTTATATTGGACTTATCAGTAAACAAAATCTCCGGCCGAATTCCACCTCAGCTATCTTCGAGACTCACAAATCTCAATCTATCATCAAATTATTTGATAGGGCAGATTCCGAGTGATTTTGAAAGCCTTGCGTATGAAAGCAGCTTTCTGAATAATTCTGGTCTATGTGTTGATACATTAGGACTAAACCTTGCTTTGTGCAATTCTGGAACTGCAAGAAGAAGAAGAAGAGGTGACTCATCCATGTCTAAGGCTCTGGTCATAATCTTGGTGGTAGTAGCTTTGTTAACGGTTTTCTTGGCGTTATTCTTGTCGATCAGTTTTTACAGAAAAAGAAAGCGATTAATGAAAAGGACATGGAAGCTAACTTCATTTCAGAGACTGAGTTTCACAAAATCAAATATTGTGTCCTCGATGTCAGAACATAATATCATTGGTAGCGGTGGATTTGGTTCTGTTTATCGCGTCGCTGTTGATGGTTTAGGCTATGTTGCTGTGAAAAAGATAAGGGGAAATAGCAAAAAGTTGGATCAAAAGCTTGTGGATTCATTTCTTGCAGAAGTTGAAATACTTAGCAATATTCGGCATAACAACATTGTGAAGTTGTTGTGTTGTATCTCAAGTGATGATTCACTACTACTTGTATACGAGTATCATGAACATCAAAGCCTTGATAGGTGGCTGCACAAGAAAAATAAGACACCGGCTGTGTCGGGAACCGTAAATGGTAACATCCTTGATTGGCCAAAGAGATTGCATATAGCCATTGGAGCTGCACAAGGTTTATGCTACATGCATAACGATTGCTCGCCACCTATTGTTCATCGAGACATGAAAACAAGTAACATTCTTTTGGATACTCAATTCAATGCAAAAGTTGCTGATTTTGGTTTGGCCAGGATATTGGTCAAGCCGGAAGAACTCGCCACCATGTCGGCTGTGGCTGGAACATTCGGCTATATTGCTCCAGAATATGCTCAAACAATACGAGTCAACGAGAAGATAGATGTCTACAGTTTTGGAGTAGTCCTATTGGAACTGACAACCGGAAAAGAGGCCAATCATGGAGACGAATACTCGTCTCTTGCAGAATGGGCGTGGCGCCACATTCAGATAGGAACCAATATAGAAGAACTTCTTGATGACGACGCTATGGAGCCTAGTAACTTGGAAGAAATGTGCAGCATCTTCAAACTCGGAGTTATGTGCACTTCAACATTGCCAGCTAGTAGACCATCGATGAAAGAAGTCTTGAAGGTATTGAGCGGCTGCAAGGATCCACTCGCCAACGCGGAGAAGATTGTTGATATTTATGATTCTGCTCCACTTCTTAAGAATATGAAATGGGAAAAGCAGTTGGAATTTTCAGCATAA 3021 0.3793 MTKSKMFIPILFFFFTYANSQQSQLYNEEHEILMKIKKHFQNPLFLSHWNTSNTSYHCSYPEITCKNDSIISLSMINTNITQTLPPFLCELKNLTYIDFQYNYIPNEFPTSLYNCSKLQHLDLSQNYFVGNIPNDIDRLANLEFLNLAGNNFSGDIPMSIGNLKNLKSLQLYQCLFNGTIPDEIGNLLNLETLLMFSYSMLPRTKLPSSFTKLKNLRIFDMHDSNLVGEIPETIGEMMALEVLDLSGNFLSGKIPNGLFTLKNLSTLYLYKNNLSGDIPDVVEAFELTSLDLSMNNLTGKIPGGFGRFEKLKYLSLYVNRLSGEVPESIGNLRFLTDFLVFQNNLSGNLPQGFGKFSKLETFQIGSNSFNGKLPQNLCYHGRLVGLTANDNNLSGELPKSLGSCSSLQIVSVENNEFSGNIPDGLWTSMNLSIIRISENMFTGQLPERLARNLSELAVSYNRFSGRIPNGVSSWKNVVMFNASNNFFNGSIPLELTSLPRLSTLLLDQNQLTGRIPSDIISWKSLQRLDLSHNQLSGDIPDAICRLPSLVILDLSVNKISGRIPPQLSSRLTNLNLSSNYLIGQIPSDFESLAYESSFLNNSGLCVDTLGLNLALCNSGTARRRRRGDSSMSKALVIILVVVALLTVFLALFLSISFYRKRKRLMKRTWKLTSFQRLSFTKSNIVSSMSEHNIIGSGGFGSVYRVAVDGLGYVAVKKIRGNSKKLDQKLVDSFLAEVEILSNIRHNNIVKLLCCISSDDSLLLVYEYHEHQSLDRWLHKKNKTPAVSGTVNGNILDWPKRLHIAIGAAQGLCYMHNDCSPPIVHRDMKTSNILLDTQFNAKVADFGLARILVKPEELATMSAVAGTFGYIAPEYAQTIRVNEKIDVYSFGVVLLELTTGKEANHGDEYSSLAEWAWRHIQIGTNIEELLDDDAMEPSNLEEMCSIFKLGVMCTSTLPASRPSMKEVLKVLSGCKDPLANAEKIVDIYDSAPLLKNMKWEKQLEFSA 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04102 1006 Gene3D Phosphorylase Kinase; domain 1 670 767 - -
Trre4g04102 1006 Gene3D Ribonuclease Inhibitor 194 336 IPR032675 -
Trre4g04102 1006 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 234 972 - -
Trre4g04102 1006 SUPERFAMILY L domain-like 33 335 - -
Trre4g04102 1006 ProSiteProfiles Protein kinase domain profile. 688 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g04102 1006 FunFam Kinase family with leucine-rich repeat domain-containing protein 768 987 - -
Trre4g04102 1006 Pfam Protein kinase domain 690 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g04102 1006 SUPERFAMILY Protein kinase-like (PK-like) 679 970 IPR011009 -
Trre4g04102 1006 SMART serkin_6 688 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g04102 1006 FunFam Leucine-rich repeat receptor-like protein kinase TDR 305 618 - -
Trre4g04102 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 822 834 IPR008271 GO:0004672|GO:0006468
Trre4g04102 1006 Gene3D Transferase(Phosphotransferase) domain 1 769 989 - -
Trre4g04102 1006 FunFam Receptor-like protein kinase HSL1 668 767 - -
Trre4g04102 1006 Gene3D Ribonuclease Inhibitor 26 184 IPR032675 -
Trre4g04102 1006 Gene3D Ribonuclease Inhibitor 337 613 IPR032675 -
Trre4g04102 1006 PRINTS Leucine-rich repeat signature 546 559 - -
Trre4g04102 1006 PRINTS Leucine-rich repeat signature 525 538 - -
Trre4g04102 1006 ProSiteProfiles Leucine-rich repeat profile. 524 546 IPR001611 GO:0005515
Trre4g04102 1006 FunFam Receptor-like protein kinase HSL1 isoform A 26 178 - -
Trre4g04102 1006 Pfam Leucine Rich Repeat 240 258 IPR001611 GO:0005515
Trre4g04102 1006 Pfam Leucine Rich Repeat 570 592 IPR001611 GO:0005515
Trre4g04102 1006 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 183 283 - -
Trre4g04102 1006 SMART LRR_typ_2 91 115 IPR003591 -
Trre4g04102 1006 SMART LRR_typ_2 237 261 IPR003591 -
Trre4g04102 1006 SMART LRR_typ_2 546 570 IPR003591 -
Trre4g04102 1006 SMART LRR_typ_2 139 163 IPR003591 -
Trre4g04102 1006 SMART LRR_typ_2 498 522 IPR003591 -
Trre4g04102 1006 SUPERFAMILY RNI-like 285 592 - -
Trre4g04102 1006 CDD STKc_IRAK 694 970 - -
Trre4g04102 1006 Pfam Leucine rich repeat 522 559 IPR001611 GO:0005515
Trre4g04102 1006 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
Trre4g04102 1006 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Trre4g04102 1006 ProSitePatterns Protein kinases ATP-binding region signature. 694 717 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04102 Trre-Chr4 49661725 49664874 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04102 29 993 Receptor kinase-like Gene Family AT5G25930 51.437 0.0 947
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre4g04102 Pkinase 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04102 - - gmx:100785907 1399.03