Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04101 ATGGCTCCAGAATATGTTCAAACAACAAAAGTTAGTGAAAAGATTGATGTCTACAGCTTTGGTGTTATCCTATTGGAACTGACAACTGGTAAAGAAGCTAACTATGGTGATGAGCATTCATCTCTTGCAGAGTGGTCTTGGCGCCACATTCGAGAAGGAAGCAATATAGAAGAGTTGCTTGACAAAGAAGTAATGGAACCAATTCACTCTGATGGAATGTGCAAAGTTTTCAAACTTGGTGTGATGTGTACTTCAACACTTCCTTCTAGTAGACCTTCCATGAAAGAGGTTTTGGAAGTATTGCTCAATTGTGGTGATTTGTTTAGTTATGGTGAGAGGAATATTGGACATAATAATGATGTTGTTCCACTTCTTAGGAATTCTAAAAGAGAGAGTAAATTGGATATTGATAATAATAGCTAG 423 0.3688 MAPEYVQTTKVSEKIDVYSFGVILLELTTGKEANYGDEHSSLAEWSWRHIREGSNIEELLDKEVMEPIHSDGMCKVFKLGVMCTSTLPSSRPSMKEVLEVLLNCGDLFSYGERNIGHNNDVVPLLRNSKRESKLDIDNNS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04101 140 ProSiteProfiles Protein kinase domain profile. 1 108 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g04101 140 Pfam Protein kinase domain 1 99 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g04101 140 Gene3D Transferase(Phosphotransferase) domain 1 1 114 - -
Trre4g04101 140 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 103 - -
Trre4g04101 140 SUPERFAMILY Protein kinase-like (PK-like) 1 101 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04101 Trre-Chr4 49657145 49658270 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04101 1 105 Receptor kinase-like Gene Family AT5G25930 60.000 5.30e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre4g04101 Pkinase 1.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04101 - - cam:101515509 247.284