Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04098 ATGACATTATTAGCCACATCTCATATCAAATTTTTATTTTACTTTCATATAGCCATTTTTCTAATTTTGAGCCATGCAAATTCTCAGTCTCAACAAGAACATTTAATCTTATTAAAAATAAAACATCAACTACAAAATCCATCTTTTCTTAGTCAATGGAACTCATCAAACACCTCTTCTTATTGTTATTGGCAAGAAATCACATGTATCAAAGGTTCTGTCACAGGGTTGACTTTGGTCAACTCCAACATAACTCAAACTATACCTTCTTTCATATGTGACCTTAAAAACCTCACACATGTTGATTTCAGCAAAAATTTCATTCCTGGTGAGTTTCCAAAATCTCTATTTAAATGTTCCAAACTTGAGTATCTTGATTTGTCAATGAATAACTTTGTTGGCAAGATTCCTTATGACATTCAAAGTTTGGTTAATTTGCAATATCTCAACCTTGGTTCAACCTATTTCAGTGGTGAAATTCCTTCTAGTATTGGAAATCTAAAGGATTTAAGATTCCTTTACCTTCAATTTTGTTCATTTAATGCTACTTTTCCTGATGAAATTGGTAACTTGTTCAACCTTGAATACTTGGATATGTCCTCTAATTATTTTCTACCTCCTTTGAAGCTTCCATTGAGCATAACCAAGTTGAAAAAATTGATAGTTTTTTACATGTATGGTTCAAATTTAGTAGGGGAAATTCCTGAGGCTATTGGTGAAATGGTTGCATTGGAGAATTTGGATATATCAAAAAATAATTTAAGTGGAAAAATTCCTAGTGGTTTGTTCATGCTAAAGAATATGAGCATAGTATATCTTGATAGAAATAGTCTCTTTGGAGAGATACCAAGTGTGGTTGAAGCTTTGAATTTGGTTGAACTTGATGTTGCTGAGAATAATCTTTCAGGAAAAATACCAAATGATTTTGGAAAGTTGATAAAGTTAACATATTTGAATTTGTTCATGAACAAGTTTTCAGGAGAGATTCCACAAAGCATAGGAAATCTTAAATCTTTAAAAGGGTTTAGTATCTTTAAGAACAAGTTTTCAGGTACAATTCCTTCTGATTTTGGACTTTACTCGAAGCTCGAATATTTTGATATAGCAATGAACAATTTTAAGGGAAAGTTACCATATAATTTGTGTTATCATGGTAAGTTACAAAACTTAACTGTTTATGAAAATCATTTAAGCGGCGAGTTACCAAAATCACTTGGAAATTGTAGTAGTTTGGTTGAGCTGAAAATTTACAAGAATGAGTTTTATGGTAAAATTCCTAGTGGTCTTTTTTGGAATACCAATTTGGTATTTTTCATGATAAGTCATAATAAGTTTATTGGTGAGCTTCCACAAAATTTGTCTTCAAATATTTCACTTTTTGATATAAGTTACAATAAGTTTTATGGTAGAATTCCAATTGAAGTATCTTCTTGGACTAATGTGGTTGAGTTTAAGGCAAGTAAGAACTATCTTAATGGAACTTTTCCTCAAGAGCTAACAAATCTTCCTAAGCTTGAAACATTGTTGCTTGATCAAAATCAGCTTAAAGGGTCACTTCCAAAAGATATAATATCATGGAAATCATTAGTGACACTAAATTTGAGTCAAAACCAACTTAATGGACAAATTCCAATATCAATTGGTCATTTGCCTTCACTTGGTGTTCTTGATCTATCAGAAAATCAATTCACGGGCGAAATACCTTCTATACTTCCTAGAATCACAAATCTCAATCTATCATCTAATTTTTTTACAGGAAGAGTTCCTAGTGAATTTGAAAATTCGGCTTTCGATAGAAGCTTTTTGAACAATTCTGGTTTATGTGCTGATACACCAAAACTTAGCCTTACCCTTTGCAATTTTGGCTTTAAAAAATTAACCAAAACCTCACATTGGTCTCTTGGTTTGATTATTAGCCTAATTCTGGTGACTTTCTTGTTGGCTTTGTTTGCATTATTCTTAATTATCAAACTTTACAGAAAAAGAAATCAAGGGTTTGATAACTCATCATGGAAACTCATTTCATTTCAAAGACTAAGTTTCACAGAATCAAACATAGTTTCCTCATTGACAGAACAAAACATCATTGGAAGTGGTGGATTCGGCACGGTATACCGCGTTCCGGTCGACGGTTTAACCTATGTTGCTGTGAAAAAAATCACTAGCAACAGAAAGTTAAGGCAAAAGCTCGAAACTTCATTTCGTGCAGAAGTTAAAATATTGAGCAATATTCGACATCGAAACATTGTGAAGTTGTTGTGTTGTATCTATAATGTGGATTCAATGATGCTTGTGTATGAGTATTTGGAACACAGCAGCCTAGACAAGTGGCTGCACAACAAGAATAAGTTATCAAATATGTCAGGTTCGGCGCGGCATGTTGTCCTTGATTGGCCTAAGCGATTGCGAATAGCCATTGGGATTGCTCATGGTTTGTGCTACATGCACCATGATTGCTCGCCTCCAATTGTTCACCGCGATATAAAAACAAGCAACATACTTTTGGATTCTGAGTTCAATGCAAAAGTTGCTGATTTTGGTCTTGCTAGGTTGTTGATAAAGGCAGGACAATCTAACACCATGTCAGCTGTGATTGGATCATTTGGTTACATGGCTCCAGAATATGTTCAAACAACTAAAGTGAATGAAAAAATTGATGTCTTCAGCTTTGGTGTTATCCTATTGGAACTAACAACTGGTAAAGAAGCTACTTATGGTGATGAACATTCATCACTTGTAGAATGGTCATGGAGGCATGTTCATGAAGGAAGCAATATAGAAGAGCTTCTTGACAAAGATTTTGTGGAACAAAGTTATTTGCATGAAATGTGTTGCATTTTCAAACTTGGAATAATGTGTACTGCTACACTTCCTTCTAGTAGACCTTCCATGAAAGAGGTGTTAAATATATTGCTTAGATTTGAAGGAGGGATTGTGTTTGGAGAGAGCAATGTTAATGTTGGGGAATATGATGTTGCTCCTTTTCTTAAAAATTCAAAAAGAGATAGTAGGTTAGATTTTGTTGATAGTGATAGTGATAGTGATTAA 3048 0.335 MTLLATSHIKFLFYFHIAIFLILSHANSQSQQEHLILLKIKHQLQNPSFLSQWNSSNTSSYCYWQEITCIKGSVTGLTLVNSNITQTIPSFICDLKNLTHVDFSKNFIPGEFPKSLFKCSKLEYLDLSMNNFVGKIPYDIQSLVNLQYLNLGSTYFSGEIPSSIGNLKDLRFLYLQFCSFNATFPDEIGNLFNLEYLDMSSNYFLPPLKLPLSITKLKKLIVFYMYGSNLVGEIPEAIGEMVALENLDISKNNLSGKIPSGLFMLKNMSIVYLDRNSLFGEIPSVVEALNLVELDVAENNLSGKIPNDFGKLIKLTYLNLFMNKFSGEIPQSIGNLKSLKGFSIFKNKFSGTIPSDFGLYSKLEYFDIAMNNFKGKLPYNLCYHGKLQNLTVYENHLSGELPKSLGNCSSLVELKIYKNEFYGKIPSGLFWNTNLVFFMISHNKFIGELPQNLSSNISLFDISYNKFYGRIPIEVSSWTNVVEFKASKNYLNGTFPQELTNLPKLETLLLDQNQLKGSLPKDIISWKSLVTLNLSQNQLNGQIPISIGHLPSLGVLDLSENQFTGEIPSILPRITNLNLSSNFFTGRVPSEFENSAFDRSFLNNSGLCADTPKLSLTLCNFGFKKLTKTSHWSLGLIISLILVTFLLALFALFLIIKLYRKRNQGFDNSSWKLISFQRLSFTESNIVSSLTEQNIIGSGGFGTVYRVPVDGLTYVAVKKITSNRKLRQKLETSFRAEVKILSNIRHRNIVKLLCCIYNVDSMMLVYEYLEHSSLDKWLHNKNKLSNMSGSARHVVLDWPKRLRIAIGIAHGLCYMHHDCSPPIVHRDIKTSNILLDSEFNAKVADFGLARLLIKAGQSNTMSAVIGSFGYMAPEYVQTTKVNEKIDVFSFGVILLELTTGKEATYGDEHSSLVEWSWRHVHEGSNIEELLDKDFVEQSYLHEMCCIFKLGIMCTATLPSSRPSMKEVLNILLRFEGGIVFGESNVNVGEYDVAPFLKNSKRDSRLDFVDSDSDSD 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04098 1015 SMART serkin_6 690 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g04098 1015 Gene3D Phosphorylase Kinase; domain 1 667 768 - -
Trre4g04098 1015 FunFam Receptor-like protein kinase HSL1 isoform A 30 182 - -
Trre4g04098 1015 SUPERFAMILY Protein kinase-like (PK-like) 680 971 IPR011009 -
Trre4g04098 1015 Gene3D Ribonuclease Inhibitor 209 359 IPR032675 -
Trre4g04098 1015 Gene3D Ribonuclease Inhibitor 361 621 IPR032675 -
Trre4g04098 1015 SUPERFAMILY L domain-like 225 590 - -
Trre4g04098 1015 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 457 612 - -
Trre4g04098 1015 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 386 621 - -
Trre4g04098 1015 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524
Trre4g04098 1015 Gene3D Ribonuclease Inhibitor 142 208 IPR032675 -
Trre4g04098 1015 Gene3D Transferase(Phosphotransferase) domain 1 769 977 - -
Trre4g04098 1015 Gene3D Ribonuclease Inhibitor 32 141 IPR032675 -
Trre4g04098 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 823 835 IPR008271 GO:0004672|GO:0006468
Trre4g04098 1015 ProSiteProfiles Protein kinase domain profile. 690 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g04098 1015 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Trre4g04098 1015 SUPERFAMILY L domain-like 30 286 - -
Trre4g04098 1015 FunFam Kinase family with leucine-rich repeat domain-containing protein 769 984 - -
Trre4g04098 1015 Pfam Leucine rich repeat 75 132 IPR001611 GO:0005515
Trre4g04098 1015 FunFam Receptor-like protein kinase HSL1 670 768 - -
Trre4g04098 1015 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 187 285 - -
Trre4g04098 1015 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 286 381 - -
Trre4g04098 1015 Pfam Protein kinase domain 692 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g04098 1015 SMART LRR_typ_2 312 336 IPR003591 -
Trre4g04098 1015 SMART LRR_typ_2 502 526 IPR003591 -
Trre4g04098 1015 SMART LRR_typ_2 143 167 IPR003591 -
Trre4g04098 1015 SMART LRR_typ_2 550 578 IPR003591 -
Trre4g04098 1015 SMART LRR_typ_2 241 265 IPR003591 -
Trre4g04098 1015 SMART LRR_typ_2 95 119 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04098 Trre-Chr4 49635060 49638616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04098 22 1008 Receptor kinase-like Gene Family AT5G25930 49.950 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre4g04098 Pkinase 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04098 - - cam:101515509 1596.64