Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04097 ATGGCATATGAGGTAAGAAGGTACTCAAAAGAAGAAAGTAAAGAAAGAATTCTCCGATATTTGAAGAAAATAAATCAAAGAAATTTCAAGAAAACCATCAAGTATGCATGTCGGAAAATTGTAGCTGATAGAAGAGTGAGAGGATATATGATTATTCCTTTGTCTCTCACTTTCTCTTCTCTATGCAACAGACAGGGTCTTGATGATCTAAACAGCTTATTTCAGTGGCCTCCTTCTCAAAAAATGAAGACTGCATAA 258 0.345 MAYEVRRYSKEESKERILRYLKKINQRNFKKTIKYACRKIVADRRVRGYMIIPLSLTFSSLCNRQGLDDLNSLFQWPPSQKMKTA 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04097 85 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 5 47 IPR045281 GO:0009909
Trre4g04097 85 ProSiteProfiles CCT domain profile. 13 55 IPR010402 GO:0005515
Trre4g04097 85 Pfam CCT motif 14 47 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04097 Trre-Chr4 49626964 49630404 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre4g04097 CCT 2.2e-10 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04097 - - vra:106761508 74.3294