Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04082 ATGTCAACTGTGGCTGGAACATTTGGCTATATGGCTCCAGAATATGTTCAAACAACTAAAGTCAGTGAAAAGATTGATCTTTTTAGCTTTGGTGTTATCCTATTGGAACTAACAACTGGTAAAAAAGCTACTCGTGGTGATGAACATTCATCTCTCGCAGATTGGTCTTGGCGCCACATTCAAGCAGAAAGTAATATTGAAGAGTTGCTTGACAAAGAAGTAATGGAACCAAGTCACTTGGATGGAATGTGTGGCATTTTCAAACTTGGGATAATGTGTACTGCTAAACTTCCATCTAGAAGACCTTCCATGAAAGATGTGTTACACATATTGCTTAGATGTGAAGGAGGGATTGCATTTGGTCAGAGGAATGATATTGTTGGGGAATATGATGTTGTCCCTTTACTTTAA 411 0.3844 MSTVAGTFGYMAPEYVQTTKVSEKIDLFSFGVILLELTTGKKATRGDEHSSLADWSWRHIQAESNIEELLDKEVMEPSHLDGMCGIFKLGIMCTAKLPSRRPSMKDVLHILLRCEGGIAFGQRNDIVGEYDVVPLL 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04082 136 Pfam Protein kinase domain 2 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g04082 136 Gene3D Transferase(Phosphotransferase) domain 1 1 120 - -
Trre4g04082 136 ProSiteProfiles Protein kinase domain profile. 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g04082 136 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 113 - -
Trre4g04082 136 SUPERFAMILY Protein kinase-like (PK-like) 2 109 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04082 Trre-Chr4 49432697 49433390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04082 1 111 Receptor kinase-like Gene Family AT5G25930 57.658 1.05e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre4g04082 Pkinase 1.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04082 - - cam:101515509 213.386