Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04046 ATGATCATTGTTGAGCTTACTGACCATAGTGGTAAATGTGAATGTGCGTTGTTTGGTGATTACGTTGATGAGGTGAATAAGAAGATTGAGAAATCTGCTGTTGGGTTGCCTATTGTTGTCATTCAGTTTGCCAAGGTTAAAATTTTTAGAGATAAGGCATCCATCCAGAATGTGATTAACACTACTAGGATTTTCGTTAATCCAGATATTCCGGAGGTCGAAACATTCAAGAATAGCATTGCTGTGCATGGTATTGAGGTTATTCCAAGATTTAGAGTAAAACTTGAGGTGACTGATGGGAAATCTACTGGGGTGTTTGTTTTGTTTGACTCCGATATGAGTCACCTCATGGAAAAGTCATGTTCCTTCTTTGTTGCTCAATCTAGGGCAAATAATTCTGGACCCCATCCCGTTGAATTTGATAGTTTGGCTGTCAGTGTCCAGTTAATAGTCCTTCCAAAACATTGTCCAATCCTATAG 480 0.3896 MIIVELTDHSGKCECALFGDYVDEVNKKIEKSAVGLPIVVIQFAKVKIFRDKASIQNVINTTRIFVNPDIPEVETFKNSIAVHGIEVIPRFRVKLEVTDGKSTGVFVLFDSDMSHLMEKSCSFFVAQSRANNSGPHPVEFDSLAVSVQLIVLPKHCPIL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04046 159 CDD RPA1_DBD_B_like 1 77 - -
Trre4g04046 159 SUPERFAMILY Nucleic acid-binding proteins 4 84 IPR012340 -
Trre4g04046 159 Gene3D - 82 148 IPR012340 -
Trre4g04046 159 Gene3D - 1 81 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04046 Trre-Chr4 49084293 49085609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04046 3 84 Core DNA Replication Machinery Family AT2G06510 29.412 2.92e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04046 - - tpra:123885964 144.05