Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04042 ATGGTTGATGCTAATACTTCATCCTTTTCATCTTCACCTTCATCATCATCACCACCACCACAATCATTAACATGTTCAAGTGAAGAAGAAAAAAAAGGAAAAAAAAGAGAAAGAGAAAACAACAATAACAACAACACTAACACTAAACATCCAGTTTATAGAGGAGTTAGAATGCGAAGTTGGGGAAAATGGGTATCCGAAATCCGAGAACCTCGGAAAAAAAACCGAATCTGGCTTGGAACATTCGCAACAGCCGAAATGGCAGCGCGTGCACACGACGCAGCTGCACTAACAATAAAAGGAAAATCAGCAATCCTTAACTTCCCTGAACTATCAGCTTCACTTCCCAGACCGTTTTCCAGCTCACCAAGAGATGTTCAAGCCGCAGCCGCCAAAGCCGCTTCGATGGTTGCTCCACCACTTTCACCAGCACCATCATCTTCCTCTTCATCTTCATCTTCATCGTCGTCTTCATCTTCTTTCTTCTCCTCGACGCCCGAAGATCTCGAGGAGATTGTTGAGTTACCAACACTTGGACCCGACCCGGATAGTGAGTATTTGTTTTTTGACCCGGTTGATTATTCTCATTTGTGGTATCAAAGCATTTATGATGATGATGATGAGAATGGTTACTTGAACATGATATCAATGCATGACCCAGAAAACACGCTACTTTCATTGTGGTCTTGA 690 0.4261 MVDANTSSFSSSPSSSSPPPQSLTCSSEEEKKGKKRERENNNNNNTNTKHPVYRGVRMRSWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDAAALTIKGKSAILNFPELSASLPRPFSSSPRDVQAAAAKAASMVAPPLSPAPSSSSSSSSSSSSSSSFFSSTPEDLEEIVELPTLGPDPDSEYLFFDPVDYSHLWYQSIYDDDDENGYLNMISMHDPENTLLSLWS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04042 229 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Trre4g04042 229 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Trre4g04042 229 MobiDBLite consensus disorder prediction 1 52 - -
Trre4g04042 229 SUPERFAMILY DNA-binding domain 52 109 IPR016177 GO:0003677
Trre4g04042 229 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
Trre4g04042 229 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Trre4g04042 229 MobiDBLite consensus disorder prediction 137 163 - -
Trre4g04042 229 MobiDBLite consensus disorder prediction 141 163 - -
Trre4g04042 229 MobiDBLite consensus disorder prediction 1 26 - -
Trre4g04042 229 MobiDBLite consensus disorder prediction 27 43 - -
Trre4g04042 229 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Trre4g04042 229 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Trre4g04042 229 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Trre4g04042 229 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Trre4g04042 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 32 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04042 Trre-Chr4 48985277 48985966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04042 20 205 AP2-EREBP Transcription Factor Family AT5G11590 51.980 1.50e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre4g04042 AP2 5.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04042 K09286 - gmx:100784134 186.037