Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04038 ATGACAGGCAACATCGGTAATGACCTCATACATTATAAAGTTACAGACTCAAATGATGATCCTATAACTCCCAAACCTGGTACATTGAGATATGGAGCTTCTGTAATTCAAGGTAAAGTGTGGATCACATTCCAAAACAATATGAATATTAGACTCATGAAACCTCTTCTCATTAGTAGTTTCACTACCATTGATGGTCGCGGAGTCAATGTCCACATTGCTAATAATGCATGTTTGATGATATTCAAGGCCACTAACATAATCATTCATAGCATTCGAGTCCATCATTGCAAAGCTCAAGCACCGGGAATGGTCATGGGGCCTAATGGAAAGGTAATTCATTTGGGTCAAGTAGATGGAGATGCAATTAGATTGGTTACGGCTTCAAAAATTTGGATTGATCATAATACACTTTATGAATGTGAAGATGGTCTTCTTGATATCACAAGAGGTTCTACTAATGTCACTATATCCAATAATTGGTTTAGAGAACAAGATAAGGTTATGCTTCTTGGTCATGATGATGGGTATGTGAGAGACAAAAACATGAAGGTTACTGTTTTGTACAATCATTTTGGACCTAACTGCAACCAACGAATGCCCAGGATTCGCCATGGATATGCACATGTAGCCAACAATCTTTACTTAGGGTGGATGCAATATGCTATTGGTGGAAGTATGGGGCCTAGTCTCAAAAGCGAGGCTAACCTCTTCATAGCACCAAAAGTTGGGAGTAAAGAGGTAACATGGAGAAAAATTGGTAATTCAAGTGGAGACAAATGGGAATTTCATTCCGTAAGGGACACATTTGAAAATGGAGCTTCCTTCACAGTAACAAAAGGAGGACGTGTGCCAAAGCCAAATTATAGCAAAGATCAAAGTTTTGAAGTTGTTGATGTTAAATCTGTTAGATCATTGACAACATCATCAGGCGCATTTCAATGCAGTAGAACATCTATATGCTGA 966 0.3841 MTGNIGNDLIHYKVTDSNDDPITPKPGTLRYGASVIQGKVWITFQNNMNIRLMKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHSIRVHHCKAQAPGMVMGPNGKVIHLGQVDGDAIRLVTASKIWIDHNTLYECEDGLLDITRGSTNVTISNNWFREQDKVMLLGHDDGYVRDKNMKVTVLYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGGSMGPSLKSEANLFIAPKVGSKEVTWRKIGNSSGDKWEFHSVRDTFENGASFTVTKGGRVPKPNYSKDQSFEVVDVKSVRSLTTSSGAFQCSRTSIC 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04038 321 SUPERFAMILY Pectin lyase-like 11 282 IPR011050 -
Trre4g04038 321 PRINTS Pollen allergen Amb family signature 18 43 IPR018082 -
Trre4g04038 321 PRINTS Pollen allergen Amb family signature 292 315 IPR018082 -
Trre4g04038 321 PRINTS Pollen allergen Amb family signature 221 240 IPR018082 -
Trre4g04038 321 PRINTS Pollen allergen Amb family signature 261 285 IPR018082 -
Trre4g04038 321 PRINTS Pollen allergen Amb family signature 199 218 IPR018082 -
Trre4g04038 321 PRINTS Pollen allergen Amb family signature 55 71 IPR018082 -
Trre4g04038 321 PRINTS Pollen allergen Amb family signature 119 140 IPR018082 -
Trre4g04038 321 Pfam Pectate lyase 57 238 IPR002022 -
Trre4g04038 321 PANTHER PECTATE LYASE 18-RELATED 6 317 IPR045032 GO:0030570
Trre4g04038 321 SMART amb_all 47 244 IPR002022 -
Trre4g04038 321 Gene3D - 1 314 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04038 Trre-Chr4 48860960 48862336 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04038 1 248 Polysaccharide Lyase AT5G09280 71.371 1.93e-143 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04038 K01728 - gmx:100780437 570.852