Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04030 ATGAATATGATTGATAGTTGTTGGAGACCAAATCCTGAATGGAGGAGGCATAGAAAACAACTATCAACTTGCTCTGTAGGCTATGTTGGAAAGATGACAGAAAACATCGGTAATGACCTCATACATTATAAAGTTACAGACCCAAATGATGATCCTATAACTCCCAAACCTGGTACATTGAGATATGGAGCTTCTGTAATTCAAGGTAAAGTGTGGATCACATTCCAAAACAATATGAATATTAGACTCATGAAACCTCTTCTCATTAGTAGTTTCACTACCATTGATGGTCGCGGAGTCAATGTCCACATTGCTAATAATGCATGTTTGATGATATTCAAGGCCACCAACATAATCATTCATAGCATTCGAGTCCATCACTGCAAAGCTCAAGCACCGGGAATGGTCATGGGGCCTAATGGAAAGGTAATTCATTTGGGTCAAGTAGATGGAGATGCAATTAGATTGGTTACAGCTTCAAAAATTTGGATTGATCATAATACACTTTATGAATGTGAAGATGGTCTTCTTGATGTCACGAGAGGTTCTACTAATGTTACTATATCCAATAATTGGTTTAGAGAACAAGATAAGGTTATGCTTCTTGGTCATGATGATGGGTATGTTAGAGACAAAAACATGAAGGTTACTGTTTTGTACAATCATTTTGGACCTAACTGCAACCAACGGATGCCCAGGATTCGCCATGGGTATGCACATGTAGCCAACAATCTTTACTTAGGGTGGATGCAATATGCTATTGGTGGAAGTATGGGGCCTAGTCTCAAAAGCGAGGCTAACCTCTTCATAGCACCAAAAGTTGGAAGTAAAGAGGTAACATGGAGAAAAATTGGTAATACAAGTGGAGATAAATGGGAATTTCACTCCGTAAGGGACGCATTTGAGAATGGAGCCTCCTTCGCGGTAACAAAAGGAGGACGTGTGCCAAAGCCAAGTTATAGCAAAGATCAAAGTTTTGAAGTTGTTGATGTTAAATCTGTTAGATCATTGACAAGATCATCAGGCGCATTGCAATGCAGTAGAACATCTATATGCTGA 1059 0.3919 MNMIDSCWRPNPEWRRHRKQLSTCSVGYVGKMTENIGNDLIHYKVTDPNDDPITPKPGTLRYGASVIQGKVWITFQNNMNIRLMKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHSIRVHHCKAQAPGMVMGPNGKVIHLGQVDGDAIRLVTASKIWIDHNTLYECEDGLLDVTRGSTNVTISNNWFREQDKVMLLGHDDGYVRDKNMKVTVLYNHFGPNCNQRMPRIRHGYAHVANNLYLGWMQYAIGGSMGPSLKSEANLFIAPKVGSKEVTWRKIGNTSGDKWEFHSVRDAFENGASFAVTKGGRVPKPSYSKDQSFEVVDVKSVRSLTRSSGALQCSRTSIC 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04030 352 Pfam Pectate lyase 89 269 IPR002022 -
Trre4g04030 352 PANTHER PECTATE LYASE 18-RELATED 1 348 IPR045032 GO:0030570
Trre4g04030 352 SMART amb_all 78 275 IPR002022 -
Trre4g04030 352 Gene3D - 1 345 IPR012334 -
Trre4g04030 352 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Trre4g04030 352 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Trre4g04030 352 PRINTS Pollen allergen Amb family signature 292 316 IPR018082 -
Trre4g04030 352 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Trre4g04030 352 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Trre4g04030 352 PRINTS Pollen allergen Amb family signature 49 74 IPR018082 -
Trre4g04030 352 PRINTS Pollen allergen Amb family signature 323 346 IPR018082 -
Trre4g04030 352 SUPERFAMILY Pectin lyase-like 42 318 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04030 Trre-Chr4 48768780 48770287 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04030 32 279 Polysaccharide Lyase AT5G09280 71.774 1.16e-142 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04030 K01728 - gmx:100780437 633.254