Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04027 ATGGGTTGCATTTATTCAAGAGTTTGCATAGGTGAAACTTGTAAAGGTTCAAGCATCAATGGTGACCCAATTTCAAGACATGAACTTCAACAAGTTTTTTCACCTTCTTCTTCAGGTGAAATTAGAGACCAATTGAATCAATTAAGCTTAACAAGAGATTCAGAAGCTGGTATTAGAAGATTAGCTAGGGTTTCATCTCAGTTTTTGCCACCAGATGGTTCAAGAATTGCAAGAATTCCTTCATGTAATTATGAATTACGTTATTCTTATCTTTCTCAACGTGGTTATTATCCTGATGCTCTTGATAAAGCAAATCAAGATAGTTTTTGTATTCATACACCTTTTGGAACTGATGTTAATGATCATTTTTTCGGTGTTTTCGATGGTCATGGTGAATATGGTGCCGAATGTTCGCAATTTGTTAAGCGTAGGCTTTGCGAGAATTTATTAAGGAATTCTAAGTTTAATGTTGATCCTGTTGAGGCTTGTCATTCGGCTTTTTTAGCAACGAATTCGCAGTTACATGCTGATATTTTAGATGATAGTATGAGTGGAACAACGGCTATAACGATTTTGGTTAGAGGGAAAACGGTTTATGTAGCGAATTGTGGTGATTCGAGAGCCGTTATAGCTGAGAAGAATGGGAAAGATGGTGAAGTTGTTGCAGTTGATTTGTCTATTGATCAGACACCTTATAGGGTTGATGAGTTAGAAAGAGTGAAACTTTGTGGTGCTAGAGTTCTTACTTTGGATCAAATTGAAGGGTTAAAGAATCCTGATGTTCAGTGTTGGGGTACCGATGAAGAAGCTGATGATGGTGATCCTCCTAGGTTGTGGATTCCAAATGGGATGTATCCCGGTACTGCTTTTACAAGGAGTATCGGTGATTCTATTGCCGAGACTATTGGTGTTGTTGCTAATCCTGAGATTGTTAGTTTTGAACTCACACCTAATCATCCATTTTTTGTTATTGCTAGTGATGGTGTTTTCGAGTTTCTTTCTAGCCAGACTGTTGTTGATATGGTTGCAAAATTCAAAGATCCGCGTGATGCTTGTGCTGCGATAGTGGCAGAATCTTATCGACTTTGGCTACAGTATGAGACTCGTACAGACGATATTACAGTCATCATTGTGCATATAAATGGGCTAAATGAACCCCCTGTTGCTCACTCAGCAAGTTCTCGTGATGTTTTACGAACCTCTGTCCCTCAAGTTATTGAGGTGACAGGTTCAGAATCTCCTTCAACTTTTGGCTGGACCGCTAGGAATAATCGCGTAAGACAAGAGTTATCAAGGGCACGCATCCGAGCAATTGAAAATTCCCTCGAGAATGGACAAGGTTGGGTTCCTCCATCATCGGCCCACAGAAAGACATGGGAGGAAGAAGCACACATAGAGCAGGCTTTGAATGATCATTTCCTCTTCCGTAAACTTACAGAATCTCAGTGTCATGTTTTATTGGTTTGCATGCAAAGAGTTGAAATCGAACCTGGGGATATTATAGTCAAACAGGGCGGTGAAAGTGACTGTTTTTATGTCGTTGGAAGCGGAGAATTTGAAGTCCTGGCGACTCAGGAAGAAAAAGACGGGGAGGTACCTAGGGTTTTGCAGCGCTACACAGCCGAAAAACTATCGTGCTTTGGAGAACTTGCTCTGATGTACAACAAACCACTCCAGGCTTCTGTACGTGCCGTAACAAAAGGAACTCTTTGGGCTTTAAAGCGTGAAGATTTTCGAGGGATTTTAATGTCAGAATTCTCTAACTTATCATCGTTGAAGTTACTTCGGTCTGTAGATCTCCTCTCAAGATTGTCAATTCTACAATTGAGTCAGATTTCCGACTCCCTTTCTGAAGTTACCTTCTCGAGCGGACAGACAATAATCGATAAAAATGAAGTCCTCGCATTGTACATTATCCAAAAGGGACGTGTAAAATTAACTTTCGATGCTGATTTATTGACAAGTCCAAATACCTTAAGCCTCAAGTCTGACATCGAAAATGAGGATGATGATGTACCGAGCGGAACAGAACTGTCGATAGAGAAGCCCGAGGGAAGCTATTTCGGTGAATGGTCCCTTCTTGATGAACAAATTGGTTCCTTAACTGCTGTTGCTGAGGAAGATGTTGTATGTGCTTTACTAACAAAGGACAAATTTGAATCAGTTATTGGCTCCTTACAAAAGATTTCTCAGGAAGATCACAAGCTGAGGGACAATTCCAAGGAGTTGACTAGAAACTTTGAATTCTCATCCCTTGATAAAGTGCAGCTCTCGGATTTGGAGTGGAGAAAGACTATATATTCCACTGATTGTTCTGATATTGGACTAGCAAATTTAAGAGATGCAGAAAATGTGCTTACTTTGAAGAAATTTTCCAAGCCAAAAGTGAAAAGGCTTGGAAAGGAATCACAAGTCTTGAAAGAGAAAGATTTGATTAAGTGTATGAGCTCTTCAGCTTGTGTACCACAAGTTTTATGCACCTTTGCCGACCGCATGTATGCTGGAATACTGCTAAATACTCGTCTTGCCTGTCCTTTATCTTCCATACTTTCAAGTCCCTTTAGCGAATCAGCGGCACAATTTTGCGCTGCTTCTGTTGTTACCGCATTAGAAGACTTGCACAAGAATGGTGTTCTCTATAGAGGTGTCTCGCGTGATGTTTTGATGTTGGATCAAACAGGACAGATACAGCTGGTGGACTTCAGATTTGGAAAGAAGCTAACTGATGAGAGAACATTCACAATTTGTGGGATGGCAGATTCGCTTGCTCCAGAGATTGTTTTGGGAAAAGGCCACGGTTTCCCTGCCGACTGGTGGGCGTTGGGAGTTTTAGTATATTTTATGTTAAAGGGCGAGATGCCATTTGGATCATGGAGAGAAAACGAACTTGATACAGTTGCCAAAATTGCAAAAAGGAAACTAAATTTTCCAGACACTTTTAGCCCTGAAGCTATTGATCTCATCTCCAAGTTACTCGATGTGGAAGAAAATACTAGACTCGGTAGCCAAGGTCCTGATTTTGTCAAGAGTCACTCATGGTTTAATGGTATCGACTGGGAAGCGCTTAGACACCGCACTTTTCCTGTTCCTCCAGAAATCATTTCTCGCATAACACAATACTTGGAAGTTCGTTATGAGGATTCTTCTGCTTCTACGGAGTCTCCATTAGAGGAGGTAGAAGAACTTAATGTGCCTGAATGGCTTGAAGATTGGTAG 3216 0.408 MGCIYSRVCIGETCKGSSINGDPISRHELQQVFSPSSSGEIRDQLNQLSLTRDSEAGIRRLARVSSQFLPPDGSRIARIPSCNYELRYSYLSQRGYYPDALDKANQDSFCIHTPFGTDVNDHFFGVFDGHGEYGAECSQFVKRRLCENLLRNSKFNVDPVEACHSAFLATNSQLHADILDDSMSGTTAITILVRGKTVYVANCGDSRAVIAEKNGKDGEVVAVDLSIDQTPYRVDELERVKLCGARVLTLDQIEGLKNPDVQCWGTDEEADDGDPPRLWIPNGMYPGTAFTRSIGDSIAETIGVVANPEIVSFELTPNHPFFVIASDGVFEFLSSQTVVDMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHINGLNEPPVAHSASSRDVLRTSVPQVIEVTGSESPSTFGWTARNNRVRQELSRARIRAIENSLENGQGWVPPSSAHRKTWEEEAHIEQALNDHFLFRKLTESQCHVLLVCMQRVEIEPGDIIVKQGGESDCFYVVGSGEFEVLATQEEKDGEVPRVLQRYTAEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILMSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLSEVTFSSGQTIIDKNEVLALYIIQKGRVKLTFDADLLTSPNTLSLKSDIENEDDDVPSGTELSIEKPEGSYFGEWSLLDEQIGSLTAVAEEDVVCALLTKDKFESVIGSLQKISQEDHKLRDNSKELTRNFEFSSLDKVQLSDLEWRKTIYSTDCSDIGLANLRDAENVLTLKKFSKPKVKRLGKESQVLKEKDLIKCMSSSACVPQVLCTFADRMYAGILLNTRLACPLSSILSSPFSESAAQFCAASVVTALEDLHKNGVLYRGVSRDVLMLDQTGQIQLVDFRFGKKLTDERTFTICGMADSLAPEIVLGKGHGFPADWWALGVLVYFMLKGEMPFGSWRENELDTVAKIAKRKLNFPDTFSPEAIDLISKLLDVEENTRLGSQGPDFVKSHSWFNGIDWEALRHRTFPVPPEIISRITQYLEVRYEDSSASTESPLEEVEELNVPEWLEDW 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04027 1071 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Trre4g04027 1071 Gene3D Jelly Rolls 450 588 IPR014710 -
Trre4g04027 1071 ProSiteProfiles cAMP/cGMP binding motif profile. 600 724 IPR000595 -
Trre4g04027 1071 PRINTS cAMP-dependent protein kinase signature 495 509 - -
Trre4g04027 1071 PRINTS cAMP-dependent protein kinase signature 510 524 - -
Trre4g04027 1071 PRINTS cAMP-dependent protein kinase signature 545 554 - -
Trre4g04027 1071 PRINTS cAMP-dependent protein kinase signature 719 731 - -
Trre4g04027 1071 CDD PP2Cc 103 380 IPR001932 -
Trre4g04027 1071 SMART serkin_6 768 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g04027 1071 Gene3D - 81 381 IPR036457 -
Trre4g04027 1071 SUPERFAMILY cAMP-binding domain-like 443 584 IPR018490 -
Trre4g04027 1071 Gene3D Jelly Rolls 589 744 IPR014710 -
Trre4g04027 1071 SMART cnmp_10 600 738 IPR000595 -
Trre4g04027 1071 SMART cnmp_10 474 597 IPR000595 -
Trre4g04027 1071 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 590 739 - -
Trre4g04027 1071 ProSiteProfiles PPM-type phosphatase domain profile. 87 380 IPR001932 -
Trre4g04027 1071 Coils Coil 726 746 - -
Trre4g04027 1071 ProSiteProfiles cAMP/cGMP binding motif profile. 474 583 IPR000595 -
Trre4g04027 1071 SUPERFAMILY cAMP-binding domain-like 591 734 IPR018490 -
Trre4g04027 1071 Pfam Cyclic nucleotide-binding domain 493 584 IPR000595 -
Trre4g04027 1071 Pfam Cyclic nucleotide-binding domain 619 723 IPR000595 -
Trre4g04027 1071 SUPERFAMILY PP2C-like 74 383 IPR036457 -
Trre4g04027 1071 Pfam Protein kinase domain 780 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g04027 1071 Gene3D Phosphorylase Kinase; domain 1 758 844 - -
Trre4g04027 1071 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 457 1037 - -
Trre4g04027 1071 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 448 588 - -
Trre4g04027 1071 SUPERFAMILY Protein kinase-like (PK-like) 751 1042 IPR011009 -
Trre4g04027 1071 Pfam Protein phosphatase 2C 116 359 IPR001932 -
Trre4g04027 1071 CDD CAP_ED 600 724 IPR000595 -
Trre4g04027 1071 CDD CAP_ED 474 583 IPR000595 -
Trre4g04027 1071 SMART PP2C_4 79 378 IPR001932 -
Trre4g04027 1071 Gene3D Transferase(Phosphotransferase) domain 1 845 1030 - -
Trre4g04027 1071 ProSiteProfiles Protein kinase domain profile. 760 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g04027 1071 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 82 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04027 Trre-Chr4 48729345 48736794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04027 1 1071 PP2C-type Phosphatase Gene Family AT2G20050 66.817 0.0 1482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Trre4g04027 Pkinase 5.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04027 - - psat:127117483 1888.23