Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04026 ATGATGAATCAACTTGGTATAAGCCTTTTGATTCTCTCAATCTTTTTCTTCCATCATGTTAGAGCACAAACACAAAATACTCCATCTTCACAAGATGTTGTCTCAAATTTCCAACCAAGTCTTGTTGTTGTCATAGGAATCCTTGGTCTCATGTTTTCATTAACATTTATTCTTCTTATTTTTGCCAAAGTTTGTCATAGGAGACAATTAATTCCTCTAAGTGAAGATCAAAATAATCAATTTCCAACACTCATGAGATCAAGGTCAAGATTTTCAGGAATTGATAAAACTGCAATAGAATCACTTCCATTTTTCAAATTCTCTTCTCTTAAAGGTTCAAAAGAAGGTTTGGAATGTTCAATATGTTTGTCAAAGTTTGAAGACCTAGAAATTCTAAGATTATTACCAAAATGTAAACATGCTTTTCATATTGATTGTATTGATCATTGGCTTGAAAAACATTCAAGTTGTCCTATTTGTAGACATAAAGTCAACATTGAAGATCAAACAACTTTTGCATATTCAAATAGTTTAAGGATGTTGGTAAGTGAAGAATCAAACATAGAGATTTTTGTCCAAAGAGAAGAAGAAAATGATCAACATGGTTCATCAAGATTTAGTATTGGAAGCAGCTTTAGAAAATTTGGAAAAGGAAATACTAAAGAAGAAGAATTGCTTATACAAAAAGGAACAAAAGAAGAAAGTGACTTAATTGAAGAAATGATTAATGCTACATCAAGTAATAGGTTCAACAACATGGAATCAAAAATTTCATTTGAGAGCAAAGTTAGTGGAAATTTTAGTCATGCAGAAAAATATGTGAATAATCATCATGATGGTGAGAAAAGATCAGTGTCAGAAATCACAGCTGTTTCTAGATTTAGAGATTTAGATATGAAGAAAAGGGTGATTGAAGATTCTTCTTTGGTTGAAAATAAGCTTAGAGAAGAAAAAATGAGGATGCTTTGGTTTCCAATTGTAAGAAGAACAACAGAATGGTTTGTGAATAGAGAAAAAAGGTCTCAACAGTCATTTGTAGATGTATAA 1047 0.3066 MMNQLGISLLILSIFFFHHVRAQTQNTPSSQDVVSNFQPSLVVVIGILGLMFSLTFILLIFAKVCHRRQLIPLSEDQNNQFPTLMRSRSRFSGIDKTAIESLPFFKFSSLKGSKEGLECSICLSKFEDLEILRLLPKCKHAFHIDCIDHWLEKHSSCPICRHKVNIEDQTTFAYSNSLRMLVSEESNIEIFVQREEENDQHGSSRFSIGSSFRKFGKGNTKEEELLIQKGTKEESDLIEEMINATSSNRFNNMESKISFESKVSGNFSHAEKYVNNHHDGEKRSVSEITAVSRFRDLDMKKRVIEDSSLVENKLREEKMRMLWFPIVRRTTEWFVNREKRSQQSFVDV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04026 348 CDD RING-H2_EL5-like 118 161 - -
Trre4g04026 348 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Trre4g04026 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 339 - -
Trre4g04026 348 SMART ring_2 119 160 IPR001841 -
Trre4g04026 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 170 IPR013083 -
Trre4g04026 348 SUPERFAMILY RING/U-box 98 167 - -
Trre4g04026 348 Pfam Ring finger domain 118 161 IPR001841 -
Trre4g04026 348 FunFam RING-H2 finger protein ATL43 94 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04026 Trre-Chr4 48705855 48707069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04026 19 339 C3H Transcription Factor Family AT2G20030 41.463 5.27e-80 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04026 K10664 - gmx:100803207 395.586