Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04023 ATGGCTTCTTCTACAATTCGTCCATCGCTTTCTTCATTCAACAAGTTACCCTCTTTCTCTTCACGCAACCTTTCTCAAAGACTCTCTCTTTTTCATCTTCGTAGTGGTATTAGACTACTGCCCCATAATTTTGCTCTTAAAGCATCTAGGTTTTTGAGAAATGATAGTAGATGTATGAGAGTGATGGCATCAAGGAACATGTCTCAATCTGCTACACAGGAAAATGCATTAGATTGGGTGAAGCAGGATAAGAGAAGAATGCTTCATGTCGTATATCGTGTTGGAGACTTGGACAAAAGTATAAAATTTTATACAGAGGGCCTAGGAATGAAGGTGCTCAGGAAGCGCGACATGACGGAGGAGAGATATACGAATGCCTTTCTTGGATATGGCCCTGAGGATGCACACTTCTCTATTGAACTAACATACAATTATGGGATTGAAACGTATGACATTGGAACCGGATTTGGCCATTTTGGTATTGCTATGGATGATATATCAAGAGTTGTGGACATTGTGAGAGCTAAAGGTGGCATAATAACTAGAGAGCCCGGTCCGGTCAAGGGAGGCGACTCAAATATTGCAGTTATCAAAGACCCTGATGGCTATAAGCTTGAACTTTTGGAAAGGTCTCCCTGTCCCGAACCCCTGTGCAAAGTAATGCTTCGGGTGGGTGATCTCGATCGATCCATAAAATTTTATGAGAAGGCTGTGGGTTTGGAGCTTCTTCGTACACAAGACGATCCAGAATCCAAGTGTACTGTTGCAATAATGGGTTATGGTCCAGAAGAAAAAAGTACTGTTCTGGAGTTGACTTACAATTACGGAGTCACGAAATATGATAAAGGAGATGCATATGCTCAGATTACGATAGGCACGGATGATGTGTACAAAACTGCAGAAGCAATTAAACTTGCTGGAGGGAAGATTACTCATGCCGGACCAGTACCTGGTTACAGAACAAAAATTACATCATGTGTGGATCCCGATGGTTGGAAAACGGTTTTTGTAGATAATCATGATTTTCGAAAGGAGCTTGAGTAG 1044 0.4176 MASSTIRPSLSSFNKLPSFSSRNLSQRLSLFHLRSGIRLLPHNFALKASRFLRNDSRCMRVMASRNMSQSATQENALDWVKQDKRRMLHVVYRVGDLDKSIKFYTEGLGMKVLRKRDMTEERYTNAFLGYGPEDAHFSIELTYNYGIETYDIGTGFGHFGIAMDDISRVVDIVRAKGGIITREPGPVKGGDSNIAVIKDPDGYKLELLERSPCPEPLCKVMLRVGDLDRSIKFYEKAVGLELLRTQDDPESKCTVAIMGYGPEEKSTVLELTYNYGVTKYDKGDAYAQITIGTDDVYKTAEAIKLAGGKITHAGPVPGYRTKITSCVDPDGWKTVFVDNHDFRKELE 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04023 347 CDD GlxI_Ni 87 208 - -
Trre4g04023 347 ProSitePatterns Glyoxalase I signature 1. 89 110 IPR018146 GO:0004462|GO:0046872
Trre4g04023 347 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 86 210 IPR037523 -
Trre4g04023 347 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 87 207 IPR004360 -
Trre4g04023 347 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 220 333 IPR004360 -
Trre4g04023 347 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 216 339 IPR037523 -
Trre4g04023 347 PANTHER LACTOYLGLUTATHIONE LYASE 62 347 - -
Trre4g04023 347 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 218 339 IPR029068 -
Trre4g04023 347 Gene3D - 213 347 IPR029068 -
Trre4g04023 347 Gene3D - 58 211 IPR029068 -
Trre4g04023 347 ProSitePatterns Glyoxalase I signature 2. 153 165 IPR018146 GO:0004462|GO:0046872
Trre4g04023 347 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 86 212 IPR029068 -
Trre4g04023 347 NCBIfam lactoylglutathione lyase 86 211 IPR004361 GO:0004462|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04023 Trre-Chr4 48666399 48670775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04023 219 336 Calmodulin-binding Proteins AT1G08110 25.694 8.44e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04023 K01759 - gmx:100802155 554.288