Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04021 ATGGATCGCATCATCGGTGACAAGTTCAAATTAGGTCGTAAGATCGGAAGTGGATCCTTCGGTGAAATCTACCTCGCTACTCATATTGATACCTTCGAGATCGTTGCTGTTAAGATCGAGACTGGTAAAACGAAGCATCCGCAATTGCTTTATGAAGCTAAGCTCTATAATATTCTTCAAGGAGGAAGTGGCATCCCAAGCATAAGATGGAGCGGTGTAGATGGGGAAGACAATGTGCTTGTTATGGATTTGTTGGGGCCTAGTCTCGAAGATCTTTTTGTTTACTGTGGAAGAAAGTTCTCCCTAAAAACTGTCTTGATGTTGGCTGATCAAATGATGACCAGAATAGAGTATGTGCATTCTAAAGGATTCCTACATAGGGATATAAAACCGGATAACTTTCTCATGGGACTTGGTCGGAAGGCAAACCTGGTCTATGTAATTGATTTTGGGCTTGCAAAACGTTATCGGGACTCTACAACAAATCGCCACATCCCCTACAGGGAGAACAAAAACTTAACAGGGACTGCACGGTATGCAAGCTGCAATACTCATCTTGGGATTGAGCAAAGCCGGCGGGATGATTTGGAGTCACTGGGATATGTGCTTTTGTACTTCCTCAGAGGAAGCCTTCCTTGGCAAAACCTAAAGGCTGCGACAAAGAAGCAAAAGTATGATAAAATATGTGAAAAGAAAGTATCAACTCCTATTGAGGTTTTATGCAAATCTCATCCTGTAGAGTTTGCTTCATACTTTCATTACTGTCATTCTTTGACCTTTGATCAGCGACCTGATTATGGATTCTTGAGGCGCCTATTTCGAGAGTTATTTGCTCGAGAAGGTTACAAATTTGATTATGTATTTGATTGGACAATTTTGAAGTACCAACAATCACAAAAGAGTAGAGCCCAGCCTCACATATCCCCGATTCCTGTAGCGAGCAACAATCGGGCAATGCCCATGGATATTGATAACCAACAAGGAGATGTCTCAGCAGAGCAAATTAAATCAGACAATGCCACTACTTCTGGTGTTAAGTTTCAATTTAAATCATCCGCGGGTAAAAATTTGGCTTCTGAAAATCCTCTTGGCAAGAATATTTTTGGTGAAACAACTATCCCTTCTACTTCATACTCTTTCGAAGCATCAAGAAGGAACTCCTCGAAGCCTGCCCCGTGTGAATCTGATCAAGAAGATTCCCTGCATACAAACATCGAGCTGCATATTTATGGGGTATTGCTTGCAAGTGATCTGCCCATGGAGACTACAAATGTGCTACAAGAATGTATAACTATGCCGAATCAGAGGCAAAAGTTTCCGCAGAATGGCTCCCGAAATAATGGTTTCTTCACAGACATCAAAGGTAACTCGAATTTGGCTGTCAGCCAGATTAATTTGTATTGTCATTTTTGGGATGAATTCAATCTGGTTTTATTTCATTGCAGTCAAGGGTCTCTTTGTTTAACCTATATATTGGCCAAAGGAGTGGAAATATGCCAGACAATTGGCATTTATATGGATGCCATCAACATTTTTTTCTTTTTGCAGGATTTCTTTTTAATATCATTATTGTCTAAAGGATGA 1584 0.4053 MDRIIGDKFKLGRKIGSGSFGEIYLATHIDTFEIVAVKIETGKTKHPQLLYEAKLYNILQGGSGIPSIRWSGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANLVYVIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLRRLFRELFAREGYKFDYVFDWTILKYQQSQKSRAQPHISPIPVASNNRAMPMDIDNQQGDVSAEQIKSDNATTSGVKFQFKSSAGKNLASENPLGKNIFGETTIPSTSYSFEASRRNSSKPAPCESDQEDSLHTNIELHIYGVLLASDLPMETTNVLQECITMPNQRQKFPQNGSRNNGFFTDIKGNSNLAVSQINLYCHFWDEFNLVLFHCSQGSLCLTYILAKGVEICQTIGIYMDAINIFFFLQDFFLISLLSKG 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04021 527 MobiDBLite consensus disorder prediction 379 398 - -
Trre4g04021 527 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g04021 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Trre4g04021 527 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g04021 527 CDD STKc_CK1_delta_epsilon 8 282 - -
Trre4g04021 527 FunFam Casein kinase I isoform delta-like 1 341 - -
Trre4g04021 527 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g04021 527 PANTHER CASEIN KINASE-RELATED 13 341 - -
Trre4g04021 527 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Trre4g04021 527 Gene3D Transferase(Phosphotransferase) domain 1 1 343 - -
Trre4g04021 527 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04021 Trre-Chr4 48652472 48658291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04021 9 213 EF-hand Containing Proteins AT4G23650 29.384 1.99e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Trre4g04021 Pkinase 1.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04021 K08960 - gmx:100805890 697.197