Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04008 ATGCAGACCCATACCACAGATACAAGAAAACCAGCATTCAGGTGGCCTGGCTTAAAAGGGAAGACATGGAATGAGGCATTACTTTACAATTCAAAACAAAACGAGTCTAGGAAAAGGGCATTTGGAAATGATGTTACAAACAGTAGCTTTGCATACTGTTACAACAACATGGTAGTGTTTATTGTTGGTAGTTCTAAAATATTATCATCATTAGATCATAAAAAACCATTGTTGGAACAACTTGAGAATGCTTTTTCCATTAAGGAATCTCCAATTTGGATGGATTGTAGTACAACTGCTGAGTGTAGGGCAATAGAGAATGCTTTTGGTGGTGCTTTGGAGTTGGCTAAAGTGACCGGATCGCGTGCTTATGAAAGATTTATGGGTCCTCAGATTAAGAAAATATTTGATCATCAGCCGGAAATTTATAATAATACCGAGAGAATCTCGCTTGTTAGTTCCTTTATGGCGTCACTTTTTATCAGTGCTTATGCTGCTATTGATCATTCTGATGGTGCATGCATGAATTTAATGGACATCAAGGAAAAGGCTTGGTCTAAAGTTGCACTTGAGGCAACTGCCACTGATTTGGAGTCGAAACTCGGAAATTTGGCCCCTGCGTATGGTGTTGCTGGAAATATTGCTTCGTATTTTGTTGAGAGGTATAACTTTAACAAGGATTGCTTGGTTATTTAA 696 0.3836 MQTHTTDTRKPAFRWPGLKGKTWNEALLYNSKQNESRKRAFGNDVTNSSFAYCYNNMVVFIVGSSKILSSLDHKKPLLEQLENAFSIKESPIWMDCSTTAECRAIENAFGGALELAKVTGSRAYERFMGPQIKKIFDHQPEIYNNTERISLVSSFMASLFISAYAAIDHSDGACMNLMDIKEKAWSKVALEATATDLESKLGNLAPAYGVAGNIASYFVERYNFNKDCLVI 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04008 231 SUPERFAMILY Actin-like ATPase domain 90 230 IPR043129 -
Trre4g04008 231 Pfam FGGY family of carbohydrate kinases, N-terminal domain 92 223 IPR018484 GO:0005975|GO:0016301
Trre4g04008 231 PANTHER SUGAR KINASE 73 231 - -
Trre4g04008 231 Gene3D - 58 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04008 Trre-Chr4 48460807 48461931 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04008 2 47 E2F-DP Transcription Factor Family AT3G48160 55.102 7.03e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04008 K00854 - gmx:100778495 289.271