Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04005 ATGGTTTCTCAGTCTCAAAAGAATGATGATGGTGATGATGATGATGTAGAAGCTAAATCTGGATGCCTTTATGTAAAAGTGAGCATGGATGGTGCTCCATACTTAAGGAAAGTGGACCTCAAAATTTTTGGCACTTACAAGGAACTATCTTCTGCATTAGAAAAGATGTTTAGTTGTTTTACACTAAGTCAATTTGGCACTCATGGAGTTTCTGGTCAAGATAATTTGTGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTCCTTACATATGAAGACAAAGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGAAGATGTTCACTGACTCTTGCAAGAGGTTAAGGATAATGAAAAGCTCTGAAGCAATTGGATTAGCACCAAGAGCCATGGAGAAATGCAAAAGTCGCAACTAG 429 0.3823 MVSQSQKNDDGDDDDVEAKSGCLYVKVSMDGAPYLRKVDLKIFGTYKELSSALEKMFSCFTLSQFGTHGVSGQDNLCESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWKMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04005 142 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 129 IPR003311 GO:0005634|GO:0006355
Trre4g04005 142 SUPERFAMILY CAD & PB1 domains 20 123 - -
Trre4g04005 142 Gene3D - 16 136 - -
Trre4g04005 142 ProSiteProfiles PB1 domain profile. 22 124 IPR000270 GO:0005515
Trre4g04005 142 FunFam Auxin-responsive protein 17 134 - -
Trre4g04005 142 Pfam AUX/IAA family 3 133 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04005 Trre-Chr4 48449599 48451952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04005 26 126 B3 DNA Binding Superfamily AT3G61830 32.673 1.50e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre4g04005 AUX_IAA 9.9e-66 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04005 K14484 - gmx:100803754 240.736