Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g04000 ATGATGATGGAGAAGAGAAAATCTCTGGCGCTGCTTACTCAGAATTTTGTCAAGCTCTTTGCCTGCTCTAATCTGGAAATGATATGCCTTGATGATGCAGCAAGTCTTTCAGCAAAGGTTAGGCGCCTTTATGATATTGCAAATGTGCTAACCTCCATGAACCTTATCGAGAAGACCCATACCACAGTTACAAGAAAACCAGCATTCAGGTGGCTAGGCTTAAAAGGGAAGACATGGAATGAGGCATTACTTTACAATTCAAAACAAAACGAGTCTAGGAAAAGGGCATTTGGAAATGATGTTACAAACAGTAGCTTTGCATACTGTTACAACAACATGGTAGTGTTTATTGTTGGTAGTTCTAAAATATTATCATCATTAGATCATAAAAAACCATTGTTGGAACAACTTGAGAATGCTTTTTCCATTAAGGAATCTCCAATTTGGATGGATTGTAGTACAACTGCTGAGTGTAGGGCAATAGAGAATGCTTTTGGTGGTGCTTTGGAGTTGGCTAAAGTGACCGGATCGCGTGCTTATGAAAGATTTACGGGTCCTCAGATTAAGAAAATATTTGATCATCAGCCGGAAATTTATAATAATACCGAGAGAATCTCGCTTGTTAGTTCCTTTATGGCGTCACTTTTTATCAGTGCTTATGCTGCTATTGATCATTCTGATGGTGCATGCATGAATTTAATGGACATCAAGGAAAAGGCTTGGTCTAAAGTTGCACTTGAGGCAACTGCCACTGATTTGGAGTCGAAACTCGGAAATTTGGCCCCTGCGTATGGTGTTGCTGGAAATATTGCTTCGTATTTTGTTGAGAGGTATAACTTTAACAAGGATTGCTTGGTTATTTAA 864 0.39 MMMEKRKSLALLTQNFVKLFACSNLEMICLDDAASLSAKVRRLYDIANVLTSMNLIEKTHTTVTRKPAFRWLGLKGKTWNEALLYNSKQNESRKRAFGNDVTNSSFAYCYNNMVVFIVGSSKILSSLDHKKPLLEQLENAFSIKESPIWMDCSTTAECRAIENAFGGALELAKVTGSRAYERFTGPQIKKIFDHQPEIYNNTERISLVSSFMASLFISAYAAIDHSDGACMNLMDIKEKAWSKVALEATATDLESKLGNLAPAYGVAGNIASYFVERYNFNKDCLVI 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g04000 287 Gene3D - 3 75 IPR036388 -
Trre4g04000 287 PANTHER SUGAR KINASE 129 287 - -
Trre4g04000 287 Pfam FGGY family of carbohydrate kinases, N-terminal domain 148 278 IPR018484 GO:0005975|GO:0016301
Trre4g04000 287 Gene3D - 110 287 - -
Trre4g04000 287 Pfam E2F/DP family winged-helix DNA-binding domain 5 73 IPR003316 GO:0005667|GO:0006355
Trre4g04000 287 SUPERFAMILY Actin-like ATPase domain 145 286 IPR043129 -
Trre4g04000 287 SMART E2F_TDP_2 4 73 IPR003316 GO:0005667|GO:0006355
Trre4g04000 287 SUPERFAMILY "Winged helix" DNA-binding domain 7 74 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g04000 Trre-Chr4 48349458 48357209 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g04000 5 74 E2F-DP Transcription Factor Family AT3G48160 43.662 6.97e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Trre4g04000 FGGY_N 7.6e-11 CL0108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g04000 K00854 - gmx:100778495 291.582