Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03997 ATGGAAAGTTCTGAGAAATTTTCTCAAAGAAATAGTAACAATGGCTTGAACCTCAAGGCTACTAAGTTAAGACTTGGTTTACCAGGTTCTAAATCACCAGAGAGAGATGATGATGTTTTTGAGGACAAAAATGTATACCCTTTATGCATGCTTAAGAGTTTAGTTTCAGGGGCAAAAAGGGGTTTTTCAGATGCCATTGATGTTGGTTCTAGTAAATGGATTCTCTCTGGAAATGGTGGATCTGAAATTGGTATGAGTAAAGATTGTACAATTCAACAAGGTTCTGTTTTGAAAGAGAAAATTGAACAGTCTTTAAATCCTTTGAATGAGAAGAAAAAGTCTCAGATAATTTCTTCAGCTGCAAAGGAACAGGTTGTAGGATGGCCACCAATCAGATCTTTCAGGAAGAATTCAATGGCTTCTCAGTCTCAAAAGAATGATGATGATGATGATGATGATGATGATGATGTAGAAGCCAAATCTGGATGCCTTTATGTAAAAGTGAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGACCTCAAATTTTTTAGCACTTACAAGGAATTATCTTCTGCACTAGAAAAGATGTTTAGTTGTTTTACACTAAGTCAATTTGGCTCTCATGGAGTTTCTGGTCAAGATAATTTGTGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTCCTTACCTATGAAGACAATGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGAAGATGTTCACTGACTCTTGCAAGAGGTTAAGGATAATGAAAAGCTCTGAAGCAATTGGATTAGCACCAAGATCCATGGAGAAGTGCAAAAGTCGCAACTAG 852 0.3732 MESSEKFSQRNSNNGLNLKATKLRLGLPGSKSPERDDDVFEDKNVYPLCMLKSLVSGAKRGFSDAIDVGSSKWILSGNGGSEIGMSKDCTIQQGSVLKEKIEQSLNPLNEKKKSQIISSAAKEQVVGWPPIRSFRKNSMASQSQKNDDDDDDDDDDVEAKSGCLYVKVSMDGAPYLRKVDLKFFSTYKELSSALEKMFSCFTLSQFGSHGVSGQDNLCESRLMDLLHGSEYVLTYEDNDGDWMLVGDVPWKMFTDSCKRLRIMKSSEAIGLAPRSMEKCKSRN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03997 283 MobiDBLite consensus disorder prediction 136 156 - -
Trre4g03997 283 Pfam AUX/IAA family 21 274 IPR033389 -
Trre4g03997 283 SUPERFAMILY CAD & PB1 domains 161 264 - -
Trre4g03997 283 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 270 IPR003311 GO:0005634|GO:0006355
Trre4g03997 283 MobiDBLite consensus disorder prediction 1 38 - -
Trre4g03997 283 FunFam Auxin-responsive protein 158 275 - -
Trre4g03997 283 Gene3D - 157 276 - -
Trre4g03997 283 ProSiteProfiles PB1 domain profile. 163 265 IPR000270 GO:0005515
Trre4g03997 283 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03997 Trre-Chr4 48331250 48333906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03997 166 273 B3 DNA Binding Superfamily AT4G23980 30.556 3.92e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre4g03997 AUX_IAA 1.4e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03997 K14484 - gmx:100803754 402.134