Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03974 ATGGATCCTCCAGCAACAAGTTGGAGCATCCATACCCGACCCGAAATAACAACCAAATACGAAATCCTCAACCACATCGGCTCCGGTTCCTACGCCGACGTCTACCGTGGCCGCCGTCTCTCCGACGGAACAACAGTCGCACTGAAAGAAGTCCACGATCACCAATCAGCATCAAGAGAAATCGATGCTTTGAAAATCCTTCGGGGCTCCGAAAACGTTGTTTTCATGCACGAGTTTTTCTGGCGAGAAGATGAAGACGCCGTGATTGTTCTCGAGTTTCTGAGGACCGATCTCGCCGCCGTGATCAGAGGTGCCGGAAGTGAGAAGATTGATGGTGGTGAGGTTAAAGGGTTGATGATGCAGATGGTTAGTGGGGTCCACGCTTGTCATCAGAATAGGATTGTTCATAGAGACTTGAAACCGGAAAATTTCTTGATTTCCGATGATGGGGTTGTTAAATTGGCAGATTTTGGACAGGCAAGGATACTTATGGAGTCGAGATTTGATGCATCAAATCATGAAAGTTCATCACAACATCCTCATGATATTATTCCCTTATTAGACAACTCAAACCAAACTGAATTTGAAAATCAAGAGGAGGAGGAAAAAATGAGTCACGATGAATATTTTAGAGTGTTAGATGACCTGAAAATTAAGAGCCACACATACGATACCGACGATAAGGACACAAACACGCACGAAGGTAACAACTCGTGCCTTGCAACATGCACAACTAGCGATGACGATGATGATGCTTGGAAGAATTCTTTGCCGTATGAAGGAGACGAGGACGGAGGGAATGAAGAACATGGTTTTCTCACATCATGTGTTGGAACTAGATGGTTTAGGGCTCCGGAACTACTTTATGGATCAACTAATTATGGTTTAGAGGTTGATCTTTGGTCATTAGGATGTGTTTTTGCCGAATTGTTAACATTGAAGCCTTTGTTTCCAGGAACAGGTGATATTGATCAAATTAGTAGAATCATTAGTGTTTTGGGTGATCTTGATGAGGAAGCTTGGAATGGTTGTTCTAAACTTCCTGATTATGGAACAATTTCTTTTACTAAGGTGGAAAATCCTATTGGCCTTGAAGCATGCATGCCAAATTGTTTGCATGATGAAGTTTCCTTGGTGAAAAAATTGGTTTGTTATGATCCATCTAGGAGAGTCACTGCAATGGAGTTACTTCATGACAAGTACTTCTCTGAAGAACCACTTCCAGTTTCTGTTTCTCAACTGTTCCTCCTATAG 1254 0.4266 MDPPATSWSIHTRPEITTKYEILNHIGSGSYADVYRGRRLSDGTTVALKEVHDHQSASREIDALKILRGSENVVFMHEFFWREDEDAVIVLEFLRTDLAAVIRGAGSEKIDGGEVKGLMMQMVSGVHACHQNRIVHRDLKPENFLISDDGVVKLADFGQARILMESRFDASNHESSSQHPHDIIPLLDNSNQTEFENQEEEEKMSHDEYFRVLDDLKIKSHTYDTDDKDTNTHEGNNSCLATCTTSDDDDDAWKNSLPYEGDEDGGNEEHGFLTSCVGTRWFRAPELLYGSTNYGLEVDLWSLGCVFAELLTLKPLFPGTGDIDQISRIISVLGDLDEEAWNGCSKLPDYGTISFTKVENPIGLEACMPNCLHDEVSLVKKLVCYDPSRRVTAMELLHDKYFSEEPLPVSVSQLFLL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03974 417 Gene3D Transferase(Phosphotransferase) domain 1 11 187 - -
Trre4g03974 417 PANTHER CELL DIVISION PROTEIN KINASE 19 408 - -
Trre4g03974 417 ProSiteProfiles Protein kinase domain profile. 20 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03974 417 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Trre4g03974 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Trre4g03974 417 Pfam Protein kinase domain 20 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03974 417 Pfam Protein kinase domain 272 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03974 417 SUPERFAMILY Protein kinase-like (PK-like) 12 408 IPR011009 -
Trre4g03974 417 FunFam Cyclin-dependent kinase F-1 11 105 - -
Trre4g03974 417 Gene3D Transferase(Phosphotransferase) domain 1 267 404 - -
Trre4g03974 417 SMART serkin_6 20 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03974 Trre-Chr4 47910897 47912952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03974 4 416 Core Cell Cycle Gene Families AT4G28980 61.860 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Trre4g03974 Pkinase 3.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03974 - - tpra:123883153 789.645