Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03971 ATGAAATTACCTTTCATCAACTTCAAAACCATAATCACCACCACCCTCCTCTTCTTTTCCATCTCCCTCCATAGTCATACCCTTCAAGCCTATGACCAACTTGTGGGGACCACTGGCACACAATATAATAATAATAATCCAACCAACCTTGCACTAAAGACAGGTGATGATGCAAGTGAGGTTGATGCTCTACTAACATGGAAAGGTAGCTTGGACAAACAAAGCCAACATATCTTAGCTTCATGGCAGCCAAATCACCCTCCTTGTAGCAGCGGCGGCAATTGGTCTGGAATTTCATGTAATAAAGCTCGAAGAATCGAAAATATAAATCTTGATAGTTATGGTTTAAGAGGTACACTTCATGATTTCAGGTTCTCATCCTTTAAACATCTCATACAAATCGCGCTTGGTAATAATTCACTATATGGAACCATTCCCCCTAACATAAGCGTGTTGTCGAAACTAATCTACCTTGATTTACGCTATAACAATTTCTCTGGATCAATCCCAAATGGCTTATGCTTCCTAACCAACCTAGAATTTCTTACCCTCTATCATAACAATATATCTGGAACTATCCCGAAAGAAATCGACAGCCTCATCAAACTGACTTATCTAGATTTGAGTCGAAACGCCTTAACAGGTGTAGTCCCGGCTTCTATAGGCAACTTGACCGAATTAACATTCCTTTCACTTTCCTACAATGAACTATTTGGATTTATTCCTCCGTCCATCGGAAACTTGATTCAACTAAAAAAGCTTAAACTATATGGCAATCAACTTAATGGTTCAATTCCTCAAAGTATTGGTAGGTTGACATCTTTGGTTATTCTTGGATTATCAACCAACAATTTGAGCGGTCCGATACCTTCTTCCATCGGCAATTTAGTGAAACTGGATACCTTACATCTATATATAAATCAGTTATCTGGTTCAATTCCTAACACTATTGGTAGGTTAACATCTTTAGTTGAACTTCAAATATCAGTTAACAACTTGAGTGGTTCAATACCGTCTTCCATCGGCAATTTAGTGAAACTGCAGATCTTATTCCTAAATCAAAATCAATTATCTGGTTCAATACCCTCTTCCTTTGGAAATTTAGTGAAATTGGAGCAATTATATCTCGATCTTAATCAATTATCTGGTTCAATCCCCCGACAATTAAATAACTTGATACATTTTAAATATTTGCAACTTAGTAATAACAATCTTTCTGGTTCTTTACCGGATAACATATGTCTCGGTGGACAACTTATTAACTTTGCTGCACACCAAAATCAATTTACTGGCAGACTTCCTACGAGCTTAAAAAATTGTACTAGTCTCGAAAGAGTTCGCCTTGAAATGAACCAATTTTCGGGAGACTTGTCAATAGCCCTTGGAATATATCCTAACTTGAATTACATTGATCTAAGTCATAATAACTTTTCTGGCACACTATCATCTAACTGGGGACAATGTAAGACTCTGACAAGCTTGAAGATCTCGAACAACAAAATTGGCGGGAGATTACCTGAAAACCTCGGAGAAGCTTCTGAAATTCATATGCTTGATCTTGGTTCTAATAAATTGGTAGGGGAAATTCCAATTTCTATCACAAATATGACTTCTTTATTCAATCTCAACTTAGAAGGCAACATGTTATCTGGAGTTATTCCGAAGGAAATTAGAATGCTCTCTGAGCTCTCTTCTCTCAACCTAGCATCGAACAATTTGAGTGGCGTAATTCCTCGAGATATCGGAGAGTGTAGAAACCTTCTGATATTGAATTTGAGTTTTAACTCTTTTGGTGAAAATATTCCCTCACAAATAGGAAATATACACTCCCTTCAAAATCTTGATTTGAGTCATAATCGGTTGAGTGGTGAAGTTCCTCAAGAATTCGGGAAACTTGTTGTCTTAGAAAGTCTAGGGCTTTCTAACAATAACATATCAGGTCTTTTGCCATCTAATCTCGACAATTGTGTAAGTTTGACTTCGATAGATATATCGAACAATGAGTTAGAAGGTCCACTGCCTGATATTCTAGCTTTTCGAAATGCTACATCCGATTCATTGAAGAATAATAAAGGTCTTTGCGGACATATTGATGGTCTAACTCCATGTTTTTCAAAAAATCAAAGGAAGAAAAAAAGCTCAAAAGCCGTGATGTTGATCGCAGTGTTCGCAGGAATCTTTGTTGTGATTGTCCTAGTTGGAATTTTTATGTGTGCCCGAAAATGGAATAAAAAAACTATGACAATTACGGAGCAGATTAATCCAATAGAAGATTTGCTTTCGATTTGGAGCTTTGATGGGAAAATGGTCTATGAAAATATAATTGAAGCAACCGGAGACTTCGATTCTGAATATTGCATCGGAAAAGGAGGATACGGAAGTGTTTATAGGGCTGAGTTATCAACTGGTCAAGTTGTTGCCGTGAAAAGACTCCACAACTCAGAAGATTTTTTGAAGTCTAAAATAGAGAAAAGCTTCATATCTGAAATTCAAGCACTAACCGAATTGCGACAACGTCACATTGTGAGGCTACTTGGATTTTGTTCACATGTTAGGAACTCATTTTTGGTTTATCAGTTTGTGGATGGAAGCAACCTTCAAAATATGTTGATGAATCATGAACAAGTTCAAAACTTCAAATGGATTAATAGATTCAATGTTGTTAAAGGAGTAGCAGATGCATTATCCTACATGCATCATGAAATATCACCTCCCTTGGTTCATAGAGACATATCAAGCAAGAATATCTTGATAGATGAGAATTTTGAAGCTCATGTAACAGACTTTGGCACTGCAAGATTCTTGAGTCAAAATTCATCTTATCAGACTTCATTTGCCGGAACATTCGGATACACAGCTCCAGAACTTGCTTATACTCGGGAGGTAAGTGAGAAATGTGATGTGTATAGTTTCGGAGTGCTAGCATTAGAAGTGGTGATGGGGATGCATCCAGGTGATCTAATGTTATCGATATTATCATCGTCTGATCCTTCTTTGATGACGATTTTGCTAAAAGATGTAATTGATCAACGCGTTTCACCTCCTGTGATGGATGAGATAGAGAAGGTAACTCTCATTACAAAGTTGGCATTTGCTTGTCTGCAACAAAACCCTCAATCTCGACCGACAATGCATGATGTTTCTAATCAACTAGCAAAATTGAAGCCAAATAATGTAGCAAGGGTTGAGTTTTCGTCCATCAAAATTGGCGAACTGCTTGCAATCGGATGTTCCATGTTTAGAACATATTATCATCCTATAAGTGTACTCCCATGA 3276 0.3721 MKLPFINFKTIITTTLLFFSISLHSHTLQAYDQLVGTTGTQYNNNNPTNLALKTGDDASEVDALLTWKGSLDKQSQHILASWQPNHPPCSSGGNWSGISCNKARRIENINLDSYGLRGTLHDFRFSSFKHLIQIALGNNSLYGTIPPNISVLSKLIYLDLRYNNFSGSIPNGLCFLTNLEFLTLYHNNISGTIPKEIDSLIKLTYLDLSRNALTGVVPASIGNLTELTFLSLSYNELFGFIPPSIGNLIQLKKLKLYGNQLNGSIPQSIGRLTSLVILGLSTNNLSGPIPSSIGNLVKLDTLHLYINQLSGSIPNTIGRLTSLVELQISVNNLSGSIPSSIGNLVKLQILFLNQNQLSGSIPSSFGNLVKLEQLYLDLNQLSGSIPRQLNNLIHFKYLQLSNNNLSGSLPDNICLGGQLINFAAHQNQFTGRLPTSLKNCTSLERVRLEMNQFSGDLSIALGIYPNLNYIDLSHNNFSGTLSSNWGQCKTLTSLKISNNKIGGRLPENLGEASEIHMLDLGSNKLVGEIPISITNMTSLFNLNLEGNMLSGVIPKEIRMLSELSSLNLASNNLSGVIPRDIGECRNLLILNLSFNSFGENIPSQIGNIHSLQNLDLSHNRLSGEVPQEFGKLVVLESLGLSNNNISGLLPSNLDNCVSLTSIDISNNELEGPLPDILAFRNATSDSLKNNKGLCGHIDGLTPCFSKNQRKKKSSKAVMLIAVFAGIFVVIVLVGIFMCARKWNKKTMTITEQINPIEDLLSIWSFDGKMVYENIIEATGDFDSEYCIGKGGYGSVYRAELSTGQVVAVKRLHNSEDFLKSKIEKSFISEIQALTELRQRHIVRLLGFCSHVRNSFLVYQFVDGSNLQNMLMNHEQVQNFKWINRFNVVKGVADALSYMHHEISPPLVHRDISSKNILIDENFEAHVTDFGTARFLSQNSSYQTSFAGTFGYTAPELAYTREVSEKCDVYSFGVLALEVVMGMHPGDLMLSILSSSDPSLMTILLKDVIDQRVSPPVMDEIEKVTLITKLAFACLQQNPQSRPTMHDVSNQLAKLKPNNVARVEFSSIKIGELLAIGCSMFRTYYHPISVLP 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03971 1091 Pfam Leucine rich repeat N-terminal domain 58 101 IPR013210 -
Trre4g03971 1091 SMART LRR_typ_2 152 176 IPR003591 -
Trre4g03971 1091 SMART LRR_typ_2 632 655 IPR003591 -
Trre4g03971 1091 SMART LRR_typ_2 224 247 IPR003591 -
Trre4g03971 1091 SMART LRR_typ_2 368 391 IPR003591 -
Trre4g03971 1091 SMART LRR_typ_2 248 272 IPR003591 -
Trre4g03971 1091 SMART LRR_typ_2 344 367 IPR003591 -
Trre4g03971 1091 SMART LRR_typ_2 296 320 IPR003591 -
Trre4g03971 1091 SMART LRR_typ_2 608 631 IPR003591 -
Trre4g03971 1091 SMART LRR_typ_2 560 584 IPR003591 -
Trre4g03971 1091 SMART LRR_typ_2 392 416 IPR003591 -
Trre4g03971 1091 SMART LRR_typ_2 200 223 IPR003591 -
Trre4g03971 1091 ProSitePatterns Tyrosine protein kinases specific active-site signature. 906 918 IPR008266 GO:0004672|GO:0006468
Trre4g03971 1091 FunFam Leucine-rich receptor-like protein kinase family protein 218 314 - -
Trre4g03971 1091 FunFam Nuclear pore complex protein NUP107 57 217 - -
Trre4g03971 1091 Pfam Leucine rich repeat 199 237 IPR001611 GO:0005515
Trre4g03971 1091 Pfam Leucine rich repeat 322 381 IPR001611 GO:0005515
Trre4g03971 1091 Pfam Leucine rich repeat 610 669 IPR001611 GO:0005515
Trre4g03971 1091 SUPERFAMILY Protein kinase-like (PK-like) 763 1051 IPR011009 -
Trre4g03971 1091 Pfam Leucine Rich Repeat 154 176 IPR001611 GO:0005515
Trre4g03971 1091 FunFam Leucine-rich repeat receptor protein kinase EMS1 315 395 - -
Trre4g03971 1091 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 396 707 - -
Trre4g03971 1091 ProSiteProfiles Protein kinase domain profile. 781 1054 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03971 1091 ProSitePatterns Protein kinases ATP-binding region signature. 787 809 IPR017441 GO:0005524
Trre4g03971 1091 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 335 1052 - -
Trre4g03971 1091 Gene3D Ribonuclease Inhibitor 416 706 IPR032675 -
Trre4g03971 1091 Pfam Protein kinase domain 786 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03971 1091 Gene3D Ribonuclease Inhibitor 217 311 IPR032675 -
Trre4g03971 1091 Gene3D Ribonuclease Inhibitor 57 216 IPR032675 -
Trre4g03971 1091 Gene3D Transferase(Phosphotransferase) domain 1 862 1068 - -
Trre4g03971 1091 Gene3D Phosphorylase Kinase; domain 1 743 860 - -
Trre4g03971 1091 FunFam MDIS1-interacting receptor like kinase 2 861 1057 - -
Trre4g03971 1091 Gene3D Ribonuclease Inhibitor 312 415 IPR032675 -
Trre4g03971 1091 SUPERFAMILY L domain-like 385 704 - -
Trre4g03971 1091 SUPERFAMILY L domain-like 95 410 - -
Trre4g03971 1091 PRINTS Leucine-rich repeat signature 608 621 - -
Trre4g03971 1091 PRINTS Leucine-rich repeat signature 203 216 - -
Trre4g03971 1091 FunFam Leucine-rich repeat receptor protein kinase MSP1 743 860 - -
Trre4g03971 1091 SMART LRR_sd22_2 200 226 - -
Trre4g03971 1091 SMART LRR_sd22_2 176 199 - -
Trre4g03971 1091 SMART LRR_sd22_2 344 370 - -
Trre4g03971 1091 SMART LRR_sd22_2 488 511 - -
Trre4g03971 1091 SMART LRR_sd22_2 608 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03971 Trre-Chr4 47892441 47896345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03971 60 954 Receptor kinase-like Gene Family AT4G08850 44.923 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre4g03971 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03971 - - tpra:123884323 1729.53