Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03951 ATGGAGGAAGGTGAAGGAGGAGAAAGTGGTTCAAAGAATGTTGTTCCGTCGGAGTTTGTTGTGGCTGTTTCACCGACGGCGGCGGCTAATACAACGGCGTGGTCGGATGCACCTGCGAAGAAGATAGTGAGGCAGCTTGATTTTAATGCTATGACGGAACAGTCGAAACAACCACAGCAGCTGTTGCAACAGACGACTGTAATGGTGCAGAAACCGGTGGCTGGTTCGCCTTTGCCGCCTCCGCCGCAGCCGATGATAGGACTTCAACACTCTTCTGTGAGGGTTGGGAAACCGGAATCTCCCAAACCAAAATCAAGACCTAACTTTGATATGAAAGAAGGTACTCCCAAGAAGCAAAAACAATGCAACTGTAAACACTCTAAGTGCTTAAAACTATATTGTGAATGTTTTGCATCGGGAATATATTGTGACGGTTGCAACTGTGTCAATTGTTTCAACAATGTTGATAACGAAGCTGCTAGACGAGAGGCTGTTGAAGCTACTTTAGAGCGCAATCCAAATGCATTTAGGCCTAAAATTGCGAGCAGCCCTCAAGGAGCACGAGATAGCAGGGAGGAGACTGGGGAAGGTTTAATATTAATAAAACATAACAAGGGATGCATGGACTGCAAGAACTTTGAGGGAAGTGAAGAGAGACAGGCTTTGTTTCACGGAGATCAAAATAACAACACATACATTCAGCAAGCGGCAAATGCTGCCATAACTGGAGCTATTGGTTCCTACGGCTATTCATCACCTCCAGTATCAAAGAAAAGAAAAGGTCAGGAACTTTTCTTGTGGCCTACATCCAAGGATCCATCAGTTAGCAAGTCGGGACAACAGGTAAACCATGTCAAAGGTCCAGCAGCAGCATCCTCATCATTGTCACCTGTATCAAATGCTCGTGTTGCAAATGCAACAACATTAGGGCAAAGTCCACAAAAATTAAAGTACAGGTCTCTTTTAGCAGACATTGTACAACCACACCACCTCAAAGAGCTTTGTTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCAAAGACACTTGCAGACCAGAAAAGTTCAGCGGAAAAACGTACAGAAGATCAGACAGAAACTTCCCTCGCTTCTTCAACTCAAGAGCAATTACCTAGTCAAAAAGACGTTGATGTTGAAAAGCCTATGGATGATGACTGTTCAAGTGCAAATCAAACAGATAAGATCAGCCCAAGTAATTCCTGTTCAGATGGCGCTGATGTCCCGAAAGGGAGGCCAATGTCTCCTGGGACTTTAGCTTTGATGTGTGATGAGCAAGATACAATGTTCATGAGAGCTTCCTCTCCCATTGGGCCTATGAACCATGCTTGCAACACATCTTCGCAATTTCCTAGTGGACAAGGAGTGACAGAGGTCTATGCTGAGCAAGAAAGGATTGTATTAACACAGTTTAGAGATTTTCTCAATAGAGTTATCACTATGGGAGAAATAAATGAGACAAAGTGTTCTTCATTGGCTAGAAGTGACTTAGAGAATCAAAAGAACCCAATCAACAATGAAACTGGAAATTCCAGTACTGACATAGTACATCAGCAGGAAGCTATTAGCAATGGTGATCCCAAAACTGTAGTTGCACCTATGGCCACAATATCAACACCTGTGGTCCCTGGTGATGCTGTAGCTGAAAATGGAGAAACTAAGCCGAAGATGGAAAAAGAACTATGA 1701 0.4392 MEEGEGGESGSKNVVPSEFVVAVSPTAAANTTAWSDAPAKKIVRQLDFNAMTEQSKQPQQLLQQTTVMVQKPVAGSPLPPPPQPMIGLQHSSVRVGKPESPKPKSRPNFDMKEGTPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVDNEAARREAVEATLERNPNAFRPKIASSPQGARDSREETGEGLILIKHNKGCMDCKNFEGSEERQALFHGDQNNNTYIQQAANAAITGAIGSYGYSSPPVSKKRKGQELFLWPTSKDPSVSKSGQQVNHVKGPAAASSSLSPVSNARVANATTLGQSPQKLKYRSLLADIVQPHHLKELCSVLVLVSGQAAKTLADQKSSAEKRTEDQTETSLASSTQEQLPSQKDVDVEKPMDDDCSSANQTDKISPSNSCSDGADVPKGRPMSPGTLALMCDEQDTMFMRASSPIGPMNHACNTSSQFPSGQGVTEVYAEQERIVLTQFRDFLNRVITMGEINETKCSSLARSDLENQKNPINNETGNSSTDIVHQQEAISNGDPKTVVAPMATISTPVVPGDAVAENGETKPKMEKEL 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03951 566 MobiDBLite consensus disorder prediction 269 298 - -
Trre4g03951 566 MobiDBLite consensus disorder prediction 349 422 - -
Trre4g03951 566 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Trre4g03951 566 MobiDBLite consensus disorder prediction 97 118 - -
Trre4g03951 566 MobiDBLite consensus disorder prediction 379 393 - -
Trre4g03951 566 SMART CXC_2 117 157 IPR033467 -
Trre4g03951 566 MobiDBLite consensus disorder prediction 268 298 - -
Trre4g03951 566 ProSiteProfiles CRC domain profile. 118 207 IPR005172 -
Trre4g03951 566 MobiDBLite consensus disorder prediction 394 409 - -
Trre4g03951 566 PANTHER TESMIN/TSO1-RELATED 207 489 IPR028307 -
Trre4g03951 566 MobiDBLite consensus disorder prediction 547 566 - -
Trre4g03951 566 MobiDBLite consensus disorder prediction 72 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03951 Trre-Chr4 47744668 47751112 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03951 38 538 CPP Transcription Factor Family AT4G29000 48.404 3.84e-156 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre4g03951 TCR 4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03951 - - gmx:100818116 744.191