Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03950 ATGGAGGAAGGTGAAGGAGGAGAAAGTGGTTCAAAGAATGTTGTTCCGTCGGAGTTTGTTGTGGCTGTTTCACCGACGGCGGCGGCTAATACAACGGCGTGGTCGGATGCACCTGCGAAGAAGATAGTGAGGCAGCTTGATTTTAATGCTATGACGGAACAGTCGAAACAACCACAGCAGCTGTTGCAACAGACGACTGTAATGGTGCAGAAACCGGTGGCTGGTTCGCCTTTGCCGCCTCCGCCGCAGCCGATGATAGGACTTCAACACTCTTCTGTGAGGGTTGGGAAACCGGAATCTCCCAAACCAAAATCAAGACCTAACTTTGATATGAAAGAAGGTACTCCCAAGAAGCAAAAACAATGCAACTGTAAACACTCTAAGTGCTTAAAACTATATTGTGAATGTTTTGCATCGGGAATATATTGTGACGGTTGCAACTGTGTCAATTGTTTCAACAATGTTGATAACGAAGCTGCTAGACGAGAGGCTGTTGAAGCTACTTTAGAGCGCAATCCAAATGCATTTAGGCCTAAAATTGCGAGCAGCCCTCAAGGAGCACGAGATAGCAGGGAGGAGACTGGGGAAGGTTTAATATTAATAAAACATAACAAGGGGTGCCATTGTAAAAAATCCGGCTGTCTTAAGAAGTACTGTGAATGCTTCCAAGCCAACGTTCTTTGTTCTGAGAATTGTAGATGCATGGACTGCAAGAACTTTGAGGGAAGTGAAGAGAGACAGGCTTTGTTTCACGGAGATCAAAATAACAACACATACATTCAGCAAGCGGCAAATGCTGCCATAACTGGAGCTATTGGTTCCTACGGCTATTCATCACCTCCAGTATCAAAGAAAAGAAAAGGTCAGGAACTTTTCTTGTGGCCTACATCCAAGGATCCATCAGTTAGCAAGTCGGGACAACAGGTAAACCATGTCAAAGGTCCAGCAGCAGCATCCTCATCATTGTCACCTGTATCAAATGCTCGTGTTGCAAATGCAACAACATTAGGGCAAAGTCCACAAAAATTAAAGTACAGGTCTCTTTTAGCAGACATTGTACAACCACACCACCTCAAAGAGCTTTGTTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCAAAGACACTTGCAGACCAGAAAAGTTCAGCGGAAAAACGTACAGAAGATCAGACAGAAACTTCCCTCGCTTCTTCAACTCAAGAGCAATTACCTAGTCAAAAAGACGTTGATGTTGAAAAGCCTATGGATGATGACTGTTCAAGTGCAAATCAAACAGATAAGATCAGCCCAAGTAATTCCTGTTCAGATGGCGCTGATGTCCCGAAAGGGAGGCCAATGTCTCCTGGGACTTTAGCTTTGATGTGTGATGAGCAAGATACAATGTTCATGAGAGCTTCCTCTCCCATTGGGCCTATGAACCATGCTTGCAACACATCTTCGCAATTTCCTAGTGGACAAGGAGTGACAGAGGTCTATGCTGAGCAAGAAAGGATTGTATTAACACAGTTTAGAGATTTTCTCAATAGAGTTATCACTATGGGAGAAATAAATGAGACAAAGTGTTCTTCATTGGCTAGAAGTGACTTAGAGAATCAAAAGAACCCAATCAACAATGAAACTGGAAATTCCAGTACTGACATAGTACATCAGCAGGAAGCTATTAGCAATGGTGATCCCAAAACTGTAGTTGCACCTATGGCCACAATATCAACACCTGTGGTCCCTGGTGATGCTGTAGCTGAAAATGGAGAAACTAAGCCGAAGATGGAAAAAGAACTATGA 1782 0.4377 MEEGEGGESGSKNVVPSEFVVAVSPTAAANTTAWSDAPAKKIVRQLDFNAMTEQSKQPQQLLQQTTVMVQKPVAGSPLPPPPQPMIGLQHSSVRVGKPESPKPKSRPNFDMKEGTPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCFNNVDNEAARREAVEATLERNPNAFRPKIASSPQGARDSREETGEGLILIKHNKGCHCKKSGCLKKYCECFQANVLCSENCRCMDCKNFEGSEERQALFHGDQNNNTYIQQAANAAITGAIGSYGYSSPPVSKKRKGQELFLWPTSKDPSVSKSGQQVNHVKGPAAASSSLSPVSNARVANATTLGQSPQKLKYRSLLADIVQPHHLKELCSVLVLVSGQAAKTLADQKSSAEKRTEDQTETSLASSTQEQLPSQKDVDVEKPMDDDCSSANQTDKISPSNSCSDGADVPKGRPMSPGTLALMCDEQDTMFMRASSPIGPMNHACNTSSQFPSGQGVTEVYAEQERIVLTQFRDFLNRVITMGEINETKCSSLARSDLENQKNPINNETGNSSTDIVHQQEAISNGDPKTVVAPMATISTPVVPGDAVAENGETKPKMEKEL 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03950 593 MobiDBLite consensus disorder prediction 421 436 - -
Trre4g03950 593 MobiDBLite consensus disorder prediction 97 118 - -
Trre4g03950 593 MobiDBLite consensus disorder prediction 376 448 - -
Trre4g03950 593 MobiDBLite consensus disorder prediction 574 593 - -
Trre4g03950 593 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 119 154 IPR005172 -
Trre4g03950 593 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
Trre4g03950 593 ProSiteProfiles CRC domain profile. 118 242 IPR005172 -
Trre4g03950 593 MobiDBLite consensus disorder prediction 296 325 - -
Trre4g03950 593 PANTHER TESMIN/TSO1-RELATED 52 516 IPR028307 -
Trre4g03950 593 MobiDBLite consensus disorder prediction 406 420 - -
Trre4g03950 593 SMART CXC_2 202 243 IPR033467 -
Trre4g03950 593 SMART CXC_2 117 157 IPR033467 -
Trre4g03950 593 MobiDBLite consensus disorder prediction 72 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03950 Trre-Chr4 47744668 47751112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03950 38 573 CPP Transcription Factor Family AT4G29000 52.273 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre4g03950 TCR 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03950 - - gmx:100818116 821.231