Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03946 ATGGCCACCACCGCCACCACCACCACCGCCATCTTCTCCTTCTTCCTTCTCTTCATTGCCTTTTTCAAAACCCTAACCCTAAATCCCTCAATTTCTCCATCACCATCACAATCTCCACCTCCAAATTACATCATAGGATTCACTCAATACAAAACCGCCGACCACCACCGTGCTTATCTTGAATCAAATCTCCGATTAAAAGGGTGGCAATGGGTTGTAAGAAACAATCCTGCAGCTAAATTCCCCACCGATTTTGGCCTTGTTTCGGTTCATGAATTGGGAATTATTGAAGAAATTAAGAAATTAGGGTTAGTGAAGTATGTTAGTTTGGATATGAGTTATAAAAGGGGTTTGATGAAACATGGTAGTGATAAAGTTGGTTCCTTTTTTGATGGGAATAAAAAACCTGGGAAGATCTTTACTAAGATGTCGTTTTGTGAAGCAGAAGAAGAACAAGAACAAGATACTGTCAATAACAATCACAATCACAATAGTTCCATCAAATGGGGGAGACAATTATTGTTCCAGAGATCACAAGTTACTTCTATGTTTGGGGCGGAAGAACTGTGGACGAAAGGGCACACGGGTGCAAAGGTCAAAATGGCCATATTTGATACTGGCATTCGTGCTGATCACCCTCATTTCCGTAACATCAAGGAGCGTACAAATTGGACCAACGAGGATACATTAAATGACAATCTTGGACATGGGACTTTCGTTGCTGGTGTTGTTGCCGGTATGGATGCCGAGTGCCTTGGTTTTGCACCAGATACAGAGATTTATGCATTTCGTGTGTTCACTGATGCACAGGTGTCATATACCTCTTGGTTCCTTGATGCCTTTAACTATGCAATTGCAACCAATATGGATGTGCTCAATTTGAGCATAGGTGGACCTGATTACTTGGATCTCCCATTTGTGGAAAAGATATGGGAGATAACAGCCAATAACATAATAATGGTTTCTGCGATTGGAAATGATGGACCACTTTATGGAACTTTGAATAATCCAGCAGATCAAAGTGATGTGATTGGTGTTGGTGGTATTGACTATAGTGACCATATGGCTTCCTTTTCCTCACGTGGCATGAGTACCTGGGAACTTCCACATGGTTATGGCCGTGTGAAGCCAGACGTAGTTGCATATGGACGAGACATAATGGGATCAAAGATTAGTTCAGGTTGTAAAAGTTTATCAGGGACCAGTGTTGCAAGTCCTGTAGTTGCTGGTGTTGTATGTTTGCTTGTCAGCGTCATTCCTGAACCTGATCGCAAAAATCTCTTAAACCCAGCAAGCATGAAACAAGCATTGGTCGAGGGTGCTGCCAAACTTGCTGGCCCTAACATGTACGAGCAGGGTGCTGGCAGAGTCGATCTGTTAGAATCATATGAGATTCTTAAGAGCTACAAACCAAGGGCAAGCATCTTTCCCAGTCTTCTTGATTACACGGACTGTCCTTATACATGGCCCTTTTGTCGTCAGCCACTCTATGCAGGTGCCATGCCTGTCATCTTCAATGCCAGCATTTTAAATGGAATGGGTGTTATTGGCTACGTCGAAAGTCCGCCAATATGGCATCCTTTTGAAGAAGTAGGGAATCTTCTAAGCATTCATTTTACATATTCTGAGGTCATCTGGCCTTGGACTGGTTATTTGGCCATTCATTTACAAATCAAGGAAGAAGGTGCACAATTTTCCGGTAACATTGAAGGTAATGTGACTCTTAGGGTTTCCAGTCCTCCAGCTCAAGGAGAAAAGCGCTCTCGAATTAGCACATGTGTGCTTCAGTTGAAGTTAAAAGTGGTGCCAACACCGCCACGAGCAAAACGAATTTTGTGGGATCAGTTTCACAATATCAAATACCCTCCAGGTTATATTCCGAGAGATTCGTTGGATGTTCGTAATGACATTCTTGACTGGCACGGGGATCATCTACATACAAATTTTCACATAATGTTCAACATGTTACGAGACACTGGTTACTATGTTGAAACACTTGGTTCTCCTCTTACCTGCTTTGATGCTCGAAACTATGGAACACTTCTTTTGGTCGATCTTGAAGAAGAGTACTTTCCTGAGGAGATTGAAAAGTTGAGAGACGATGTTATAAATACTGGATTGGGATTAGCTGTCTTTGCTGAGTGGTACAATGTAGATACCATGGTAAAGATGAGATTCTTTGATGATAATACCCGGAGTTGGTGGACCCCTGTCACTGGAGGTGCTAATAATCCTGCTCTTAATGATCTTTTGGCTCCATTTGGAATTGCTTTTGGAGACAAGATTCTGAGCGGTGATTTTTCACTTTTCGGTGAGGAGAACCGATATGCATCTGGAACAGATATAGTGAGGTTTCCAAGGGGTGGTTATGTACATAGTTTTCCTTTCTCGGATAGTTCAGAAAGTGGAGCCACTCAGAATGTGTTGCTTACTTCTAGCACCACCAAGGCAGATTCTCCGATTCTTGGTCTTACAGTGATGGGTGAAGGTCGCATTGCTGTGTATGGTGACTCCAACTGTTTGGACAGCAGCCATATGGTGACTAACTGTTTTACACTTCTGAGGAAAATGCTAGATTTTACTAGCGAGAATGTTAGAGATCCAGTGCTTTTCTCTAATTCAAATAAACAAGACGCTCCCTTATATGAAGACGACAATCAGTTACCATCTCGCAGAACTGATGTGAATTTCTCTTCATATTCAGCTGTTGTGGGGAAGGACTTGATCTGCAGGACCGACTCAAGGTTCGAAATATGGGGAACTAAGGGCTACATTTTGCAAGTTAGAGGAAGAAACAGAAGATTGCCTGGCTATCCTTTCATCGATCTCGGGAATGGTTTAAATTCAACCTTTGATGCTTCTAACATTAGGCGTCGAAAGGTAACTTTGAGAAATAAGGACGACTCTCTTGGGAATAGATATTTGGGCCTGTTCTATGGAGATGAGCCTGACGCACCTATGTTGGTTGGTAGTCACTGGCTTATTCCTGCTGTTGTCGCAGCAACTGGTATTTTACTATTGAGTTTTTGGCGCATTCGCCAAAAGAGACGTCGAAGGAGAAAAGGATCATCAAGCTCTGGTAGATTGACCAATTTATAG 3099 0.425 MATTATTTTAIFSFFLLFIAFFKTLTLNPSISPSPSQSPPPNYIIGFTQYKTADHHRAYLESNLRLKGWQWVVRNNPAAKFPTDFGLVSVHELGIIEEIKKLGLVKYVSLDMSYKRGLMKHGSDKVGSFFDGNKKPGKIFTKMSFCEAEEEQEQDTVNNNHNHNSSIKWGRQLLFQRSQVTSMFGAEELWTKGHTGAKVKMAIFDTGIRADHPHFRNIKERTNWTNEDTLNDNLGHGTFVAGVVAGMDAECLGFAPDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATNMDVLNLSIGGPDYLDLPFVEKIWEITANNIIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDYSDHMASFSSRGMSTWELPHGYGRVKPDVVAYGRDIMGSKISSGCKSLSGTSVASPVVAGVVCLLVSVIPEPDRKNLLNPASMKQALVEGAAKLAGPNMYEQGAGRVDLLESYEILKSYKPRASIFPSLLDYTDCPYTWPFCRQPLYAGAMPVIFNASILNGMGVIGYVESPPIWHPFEEVGNLLSIHFTYSEVIWPWTGYLAIHLQIKEEGAQFSGNIEGNVTLRVSSPPAQGEKRSRISTCVLQLKLKVVPTPPRAKRILWDQFHNIKYPPGYIPRDSLDVRNDILDWHGDHLHTNFHIMFNMLRDTGYYVETLGSPLTCFDARNYGTLLLVDLEEEYFPEEIEKLRDDVINTGLGLAVFAEWYNVDTMVKMRFFDDNTRSWWTPVTGGANNPALNDLLAPFGIAFGDKILSGDFSLFGEENRYASGTDIVRFPRGGYVHSFPFSDSSESGATQNVLLTSSTTKADSPILGLTVMGEGRIAVYGDSNCLDSSHMVTNCFTLLRKMLDFTSENVRDPVLFSNSNKQDAPLYEDDNQLPSRRTDVNFSSYSAVVGKDLICRTDSRFEIWGTKGYILQVRGRNRRLPGYPFIDLGNGLNSTFDASNIRRRKVTLRNKDDSLGNRYLGLFYGDEPDAPMLVGSHWLIPAVVAATGILLLSFWRIRQKRRRRRKGSSSSGRLTNL 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03946 1032 ProSitePatterns Serine proteases, subtilase family, serine active site. 400 410 IPR023828 -
Trre4g03946 1032 PRINTS Subtilisin serine protease family (S8) signature 399 415 IPR015500 -
Trre4g03946 1032 PRINTS Subtilisin serine protease family (S8) signature 196 215 IPR015500 -
Trre4g03946 1032 PRINTS Subtilisin serine protease family (S8) signature 232 245 IPR015500 -
Trre4g03946 1032 CDD Peptidases_S8_SKI-1_like 190 446 IPR034185 -
Trre4g03946 1032 ProSitePatterns Serine proteases, subtilase family, histidine active site. 236 246 IPR022398 -
Trre4g03946 1032 ProSiteProfiles Serine proteases, subtilase domain profile. 168 466 - -
Trre4g03946 1032 PANTHER PEPTIDASE S8 35 450 - -
Trre4g03946 1032 FunFam subtilisin-like protease SBT6.1 168 462 - -
Trre4g03946 1032 Pfam Subtilase family 197 447 IPR000209 GO:0006508|GO:0008236
Trre4g03946 1032 Gene3D Peptidase S8/S53 domain 169 462 IPR036852 GO:0004252|GO:0006508
Trre4g03946 1032 SUPERFAMILY Subtilisin-like 175 459 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03946 Trre-Chr4 47721813 47728300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03946 270 1010 Subtilisin-like Serine Gene Family AT5G19660 79.278 0.0 1236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03946 K08653 - gmx:100819188 1783.46