Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03945 ATGTCAACTGCTCCGGCGCCATCTTCGCCGCCGGCTGGGAACGGCACCGCGCCTCCGCCGTCAACCCCTGCCGCACCACCACCTGCAACACCTTCCTCACCACCACCTGCAACACCTTCATCACCACCTCCGGCAGTTCCGTCGTCACCTCCGCCGGCTACTCCCTCCGCTCCTCCTCCGGCGACTCCTTCAAAACCACCTCCGACGACTCCGTCAGCGCCTCCACCAACTACACCTTCGATTTCTCCACCAGCACCAACCACGCCGTCGACAACTCCTCCGTCGAGTTCTCCGCCATCACCACCGTCGTCGACTCCCGGAAGTGGCACTACTCCGAGTCCACCATCACCACCTTCCACCAAAACTCCACCAACCTCTGATCGAAGCCCAACACCACCTTCCTCCAAATCTCCACCATCTCCACCTTCATCATCGTCGAGTATCTCTACCGGAGTTGTCGTCGGAATCGCCGTCGGAGCTGTGGCAATTCTTGTTGTTTTGAGCATTCTGTGCATTTGCTGTAGGAAGAAAAAGAGAAGACGTGATGAAGAATACTATGGTCAACAGCATCACCAACCACCACCACCTCAGGGATCCAAAGTTGATCCTTATGGTGGTCCACCACAACAATGGCAACATAATGCTTACCCTCCGTCAGATCATGTAGTTTCAACAATCCCTAAGCCGCCACCTCCTGCGCCAATACCCTCGCGACCGCCATCTCATGTTGCGCCGCCACCTCCACCTTTCATAAGCAGCAGTGGTGGTTCCGGATCAAACTTCTCAGGCGGCGAACTACTTCCACCTCCTTCTCCAGGCCTTGCATTTAGCTCCGCGAAAAGCACTTTTACTTACGAGGAGTTGGCACGTGCAACTGATGGCTTCTCTGATGCTAACCTACTTGGACAAGGTGGATTTGGATATGTTCATAGAGGCATACTCCCTAATGGTAAAGAGGTTGCTGTTAAGCAGCTAAAAGCGGGAAGTGGACAAGGAGAACGCGAGTTTCAAGCTGAAGTAGAGATTATTAGTCGTGTACATCACAAGCATCTTGTTTCCCTTGTTGGATACTGCAGCACTGGTTTTCAGAGGCTACTTGTTTATGAATTTGTTCCCAACAATACATTGGAATTCCATTTACATGGAAAAGGACGACCAACAATGGATTGGGCAACAAGACTGAGAATTGCTTTAGGATCTGCGAAAGGATTGGCTTATCTTCACGAAGATTGTCATCCTAAGATCATCCATCGTGATATCAAAGCTGCTAACATTCTTCTGGATTTTAAGTTTGAAGCAAAGGTCGCTGATTTTGGTCTCGCAAAGATTGCTTCTGATCTGAATACTCATGTTTCTACTCGAGTGATGGGGACTTTTGGGTATTTGGCTCCGGAATACGCAGCAAGTGGAAAACTTACAGACAAATCAGATGTTTTCTCGTATGGAGTCATGCTCCTCGAGTTATTAACTGGACGGCGTCCGGTTGATAAGAACCAGACTTTCATGGAGGATAGTTTGGTAGAATGGGCTAGGCCTTTGCTCATGCGTGCATTAGAAGAAGATAATCTCGATTCTCTAATTGATCCAAGGCTGCAGAATGAATTTGACCCTAATGAGATGACTCGTATGGTGGCATGCGCTGCAGCTTGCACGCGTCACTCAGCAAAGCGTCGACCAAGAATGAGTCAGGTCGTGCGCGCTCTCGAAGGAGATGTGTCACTAGCAGATCTTAATGAAGGGATTAGACCAGGACACAGTTCTGTTTACAGTTCTCATGAAAGCTCCGATTATGATACTCAACAATACAAAGAAGACATGATAAAGTTCAGAAAAATGGCATTAGGAACTCAAGAGTACGCTGGAAGCAGCGAATACAGTGCGGCTACAAGCGAGTACGGTCTAAACCCGTCCGGCTCAAGCAGCGAAAACCAAAGCCGTCAAACAACGAGGGAAATGGAAATGAGAAAGCTGAAGAACAGTCAAGGATTCAGTGGAAGTTCATGA 2004 0.493 MSTAPAPSSPPAGNGTAPPPSTPAAPPPATPSSPPPATPSSPPPAVPSSPPPATPSAPPPATPSKPPPTTPSAPPPTTPSISPPAPTTPSTTPPSSSPPSPPSSTPGSGTTPSPPSPPSTKTPPTSDRSPTPPSSKSPPSPPSSSSSISTGVVVGIAVGAVAILVVLSILCICCRKKKRRRDEEYYGQQHHQPPPPQGSKVDPYGGPPQQWQHNAYPPSDHVVSTIPKPPPPAPIPSRPPSHVAPPPPPFISSSGGSGSNFSGGELLPPPSPGLAFSSAKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCSTGFQRLLVYEFVPNNTLEFHLHGKGRPTMDWATRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKIASDLNTHVSTRVMGTFGYLAPEYAASGKLTDKSDVFSYGVMLLELLTGRRPVDKNQTFMEDSLVEWARPLLMRALEEDNLDSLIDPRLQNEFDPNEMTRMVACAAACTRHSAKRRPRMSQVVRALEGDVSLADLNEGIRPGHSSVYSSHESSDYDTQQYKEDMIKFRKMALGTQEYAGSSEYSAATSEYGLNPSGSSSENQSRQTTREMEMRKLKNSQGFSGSS 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03945 667 FunFam proline-rich receptor-like protein kinase PERK1 273 370 - -
Trre4g03945 667 ProSiteProfiles Protein kinase domain profile. 295 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03945 667 Gene3D Transferase(Phosphotransferase) domain 1 371 578 - -
Trre4g03945 667 MobiDBLite consensus disorder prediction 223 252 - -
Trre4g03945 667 Pfam Protein tyrosine and serine/threonine kinase 300 568 IPR001245 GO:0004672|GO:0006468
Trre4g03945 667 MobiDBLite consensus disorder prediction 1 149 - -
Trre4g03945 667 SUPERFAMILY Protein kinase-like (PK-like) 274 568 IPR011009 -
Trre4g03945 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Trre4g03945 667 MobiDBLite consensus disorder prediction 620 647 - -
Trre4g03945 667 MobiDBLite consensus disorder prediction 620 667 - -
Trre4g03945 667 Gene3D Phosphorylase Kinase; domain 1 271 370 - -
Trre4g03945 667 MobiDBLite consensus disorder prediction 184 267 - -
Trre4g03945 667 SMART serkin_6 295 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03945 667 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 159 635 IPR047117 -
Trre4g03945 667 FunFam Proline-rich receptor-like protein kinase PERK1 371 579 - -
Trre4g03945 667 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Trre4g03945 667 MobiDBLite consensus disorder prediction 11 140 - -
Trre4g03945 667 PRINTS Proline rich extensin signature 60 76 - -
Trre4g03945 667 PRINTS Proline rich extensin signature 4 20 - -
Trre4g03945 667 PRINTS Proline rich extensin signature 39 60 - -
Trre4g03945 667 PRINTS Proline rich extensin signature 24 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03945 Trre-Chr4 47706577 47709915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03945 114 650 Trihelix Transcription Factor Family AT1G70460 50.093 8.68e-173 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trre4g03945 PK_Tyr_Ser-Thr 7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03945 - - gmx:100781944 809.675