Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03931 ATGGTTAATGAACAAAACACAGATAACCTTATCAAGTGGGGTCCATCTAACAACAGTTTCATCGTCCTTGATCCACTCCAATTCTCTCACTCTCTTCTTCCTGTTTTCTTCAAACACAACAATTTCTCTAGCTTTGTTCGTCAACTCAATACCTACGGTTTTAGAAAAGTGGATCCGGATCGATGGGAATTTGCGAATGAGTATTTTCTAAGAGGACAAAAGCACTTATTGAAGAACATAGTTAGGAAGAAGCACGTTGGTGGAGTAGGAAATGGAAGGAATAATACTAATAATTATTACAACAATAATAATTATTTTAATGAAGTGAAATTTGAAGATTTAAAAGAAGATGAAGTAATGATGAAGGAAATATTGAAGCTAAAAGAAGAACAAAGAATTTTAGATGAAGAGCTTCAAGGAATGAACAAAAGATTAGAAACAACAGAAAAAAGACCGCAACAAATGATGGCTTTTCTTTGCAATGTCGTTGAAGATCCTCAAATTCTATCAAGAATATTAAATGAGAGAGAGAAGCAAATAATTGTTGAGAAGAAAAAACGACGGTTTATTTCTCCGCCGGAGACGGCGGCGATGACGGCGGCGACGATGTCAACTTCTTCGTCATCTTCCGGCATGGGGATAGCGAATTCGGTGAAGATGGAGTTTGATGAAGTCGAGGTAACCGTTGCGAATAATATGATGTCGTCTTCGCCGGAGTTGGGTTTTGAAATTGATTATTTCCACCGTGCACCGCCGCGGGAGTTGACTCCGGTGGGAGGTTGGTGGGGGCAGACGCAGATTGGACAAATGAGTTTTGGGAATGATTGTGGAGTTGGTCCGACTCCGTTGACGGTGGTGTCTCCGGTGCCGGTGATGGGTGGTGGGAATAGTGATAGTAGAACGGAGCGTGTGGGAATTTTCAATGAAATTGCGGCGGAGAATAGTAAGTTGCCACCTTATCCTTTTTCATTGTTAGAAGGTGGCTTTTAG 990 0.4101 MVNEQNTDNLIKWGPSNNSFIVLDPLQFSHSLLPVFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEYFLRGQKHLLKNIVRKKHVGGVGNGRNNTNNYYNNNNYFNEVKFEDLKEDEVMMKEILKLKEEQRILDEELQGMNKRLETTEKRPQQMMAFLCNVVEDPQILSRILNEREKQIIVEKKKRRFISPPETAAMTAATMSTSSSSSGMGIANSVKMEFDEVEVTVANNMMSSSPELGFEIDYFHRAPPRELTPVGGWWGQTQIGQMSFGNDCGVGPTPLTVVSPVPVMGGGNSDSRTERVGIFNEIAAENSKLPPYPFSLLEGGF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03931 329 Gene3D - 1 84 IPR036388 -
Trre4g03931 329 PRINTS Heat shock factor (HSF) domain signature 32 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre4g03931 329 PRINTS Heat shock factor (HSF) domain signature 45 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre4g03931 329 SUPERFAMILY "Winged helix" DNA-binding domain 1 83 IPR036390 -
Trre4g03931 329 Coils Coil 124 151 - -
Trre4g03931 329 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 207 IPR027725 -
Trre4g03931 329 ProSitePatterns HSF-type DNA-binding domain signature. 33 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre4g03931 329 SMART hsfneu3 1 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre4g03931 329 FunFam Heat stress transcription factor B-4 1 84 - -
Trre4g03931 329 Pfam HSF-type DNA-binding 1 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03931 Trre-Chr4 47472669 47474337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03931 1 188 HSF AT3G24520 58.333 7.37e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre4g03931 HSF_DNA-bind 9.8e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03931 K09419 - gmx:100794896 329.717