Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03930 ATGGGGATGGAGCAAAACAACGTGATCGCACCGTTCATTATGAAGACATATCACATGGTTAATGAACAAAACACAGATAACCTTATCAAGTGGGGTCCATCTAACAACAGTTTCATCGTCCTTGATCCACTCCAATTCTCTCACTCTCTTCTTCCTGTTTTCTTCAAACACAACAATTTCTCTAGCTTTGTTCGTCAACTCAATACCTACGGTTTTAGAAAAGTGGATCCGGATCGATGGGAATTTGCGAATGAGTATTTTCTAAGAGGACAAAAGCACTTATTGAAGAACATAGTTAGGAAGAAGCACGTTGGTGGAGTAGGAAATGGAAGGAATAATACTAATAATTATTACAACAATAATAATTATTTTAATGAAGTGAAATTTGAAGATTTAAAAGAAGATGAAGTAATGATGAAGGAAATATTGAAGCTAAAAGAAGAACAAAGAATTTTAGATGAAGAGCTTCAAGGAATGAACAAAAGATTAGAAACAACAGAAAAAAGACCGCAACAAATGATGGCTTTTCTTTGCAATGTCGTTGAAGATCCTCAAATTCTATCAAGAATATTAAATGAGAGAGAGAAGCAAATAATTGTTGAGAAGAAAAAACGACGGTTTATTTCTCCGCCGGAGACGGCGGCGATGACGGCGGCGACGATGTCAACTTCTTCGTCATCTTCCGGCATGGGGATAGCGAATTCGGTGAAGATGGAGTTTGATGAAGTCGAGGTAACCGTTGCGAATAATATGATGTCGTCTTCGCCGGAGTTGGGTTTTGAAATTGATTATTTCCACCGTGCACCGCCGCGGGAGTTGACTCCGGTGGGAGGTTGGTGGGGGCAGACGCAGATTGGACAAATGAGTTTTGGGAATGATTGTGGAGTTGGTCCGACTCCGTTGACGGTGGTGTCTCCGGTGCCGGTGATGGGTGGTGGGAATAGTGATAGTAGAACGGAGCGTGTGGGAATTTTCAATGAAATTGCGGCGGAGAATAGTAAGTTGCCACCTTATCCTTTTTCATTGTTAGAAGGTGGCTTTTAG 1044 0.4119 MGMEQNNVIAPFIMKTYHMVNEQNTDNLIKWGPSNNSFIVLDPLQFSHSLLPVFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEYFLRGQKHLLKNIVRKKHVGGVGNGRNNTNNYYNNNNYFNEVKFEDLKEDEVMMKEILKLKEEQRILDEELQGMNKRLETTEKRPQQMMAFLCNVVEDPQILSRILNEREKQIIVEKKKRRFISPPETAAMTAATMSTSSSSSGMGIANSVKMEFDEVEVTVANNMMSSSPELGFEIDYFHRAPPRELTPVGGWWGQTQIGQMSFGNDCGVGPTPLTVVSPVPVMGGGNSDSRTERVGIFNEIAAENSKLPPYPFSLLEGGF 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03930 347 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre4g03930 347 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre4g03930 347 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre4g03930 347 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 225 IPR027725 -
Trre4g03930 347 Coils Coil 142 169 - -
Trre4g03930 347 Gene3D - 4 102 IPR036388 -
Trre4g03930 347 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre4g03930 347 FunFam Heat stress transcription factor B-4 4 102 - -
Trre4g03930 347 SUPERFAMILY "Winged helix" DNA-binding domain 9 101 IPR036390 -
Trre4g03930 347 ProSitePatterns HSF-type DNA-binding domain signature. 51 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre4g03930 347 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03930 Trre-Chr4 47472615 47474337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03930 8 206 HSF AT3G24520 59.606 3.67e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre4g03930 HSF_DNA-bind 3.2e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03930 K09419 - gmx:100794896 352.829