Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03928 ATGCCGCGATCAAGTTCTGGAATTCATCACCAGCGTCAGAACTCTGATAATTTCATCCTTGATGCAAATTATCATGGAAGATGGTTTCAACCTTCATCTTTTGCACAAGAATTTGGAACTCGATCATCGAGCTTGAGGAAGAATGATGATGATCGTTTGTTCACCAGTGGCTTGCTTGACTTACATTCGTTTGATACTGAGCTTTTACCTGAGGGACAATATTTTGATGACTCCGAGCCAATTTTCCCTGGGAACAAACTCGCGCCTAGGTCTCGGGGCTTGGCTGAGAGCAACGTTCTTAAAAGTTTTGCAGCAGATAAAGAGAGAGCAAACAATGTTGCTAAGATCAAAGTTGCGGTTAGGAAGAGACCACTAAATAAGAAGGAAATAGCTAAGAAAGAGGAAGATATTATTACCATAGACTCAAATTCTCTCACAGTTCACGAAAGAAAACTCAAGGTTGACTTGGCAGAATACGTCGAGAAACATGAGTTCTTTTTTGATGCTGTGCTGGATGAAGATGTTTCAAATGGTGAAGTGTATGCTGAGACTGTGGAGCCCATAGTTCCATTGATATTCCAACGAACAAAAGCAACTTGTTTTGCATATGGCCAAACTGGGAGTGGAAAGACTTACACTATGCAACCATTGCCTCTCAAAGCATCCCAAGATATTTTAAGATTAATGCACCACACATACCAGAACCAAGGTTTCCAATTATACGTTAGTTTTTTCGAAATATATGGGGGGAAACTGTTTGATCTTCTCAATGATAGAAAAAAACTTTTGATGAGGGAGGATGGTAGACAGCAAGTTTGCATTGTTGGCTTGCAAGAATACAGAGTTTTTGAAGTTGAAACGATCAAGCAATTTATTGAGAAAGGAAATGCTGCAAGAAGTACTGGTACAACCGGTGCAAATGAGGAATCTTCTCGATCACATGCTATACTTCAACTTGTTATCAAGAGATCAGCTGATGGGTCTGAATCAAAGCCTGCTCGAGTTATAGGCAAACTTTCTTTCATAGATCTGGCTGGAAGTGAACGCGGTGCAGATACTACTGACAATGATAAGCAGACTAGGATTGAAGGTGCTGAAATTAATAAAAGCTTACTTGCATTAAAAGAATGCATTAGAGGTCTAGACAATGACCAAGGGCATATCCCTTTCAGAGGAAGTAAATTGACTGAAGTTCTGCGAGACTCTTTTGTTGGTAATTCACGGACTGTAATGATATCTTGCATTTCGCCAAGCTCGGGTTCATGTGAGCATACTCTCAACACATTAAGATATGCTGACAGGGTAAAGAGCTTGTCAAAGGGTAATAGCTCCAGAAGGGATCCTCTTTCTTCATCAAACCGTAGAGACTCAACTGTGTTTCCGGTTATACCTCATGATGATACTTTTGAGGATGAAACAACCTATGTTTCCAGTGAGAGGAATCAATTCGGATGGTCCAAACAGCCTGAAAGAGAACCCTCACCATCAAATAATGTGGACCGTGTTGCAAGTGGTAGGTTCAAGGGAAATTTGGCACCATCAGTGTATTCTGACCAACAAAGGGGTCAAAGAGGCATTCAAAATGGTAGAACTGAAAAGGAAAATGATTACCTAGCACCAACATATGGACAAGACAGAACAAGAAAAACGAGCAAGAGGGTGGATAACAACCAGTTATCTACCGTAGAAGACAAAAGGAAGATAGACTCTCGTTCTAAACATGTAAATCTATCACATGTTGAGAATACATATTCTGATCCCGATGATGATTTTAACGCTCTTCTGAAGGATGAGGAAGATCTTGTAACTGCTCACCGTAGACAAGTGGAGGAAACAGTAGATATTGTTAGGGAGGAGATGAATTTACTCTTTCAAGCTGATCAACCAGGAAATCAATTGGATGATTATATTTCCAAATTGGATACCATTTTGTCTCAAAAGGCTGCAGGAATATTTCAATTGCAGGCACAGTTGGCTCAATTCCAGAGACGTTTAAATGAGTATAACATTTTCTCATCTTCCGGTGACTGA 2031 0.4018 MPRSSSGIHHQRQNSDNFILDANYHGRWFQPSSFAQEFGTRSSSLRKNDDDRLFTSGLLDLHSFDTELLPEGQYFDDSEPIFPGNKLAPRSRGLAESNVLKSFAADKERANNVAKIKVAVRKRPLNKKEIAKKEEDIITIDSNSLTVHERKLKVDLAEYVEKHEFFFDAVLDEDVSNGEVYAETVEPIVPLIFQRTKATCFAYGQTGSGKTYTMQPLPLKASQDILRLMHHTYQNQGFQLYVSFFEIYGGKLFDLLNDRKKLLMREDGRQQVCIVGLQEYRVFEVETIKQFIEKGNAARSTGTTGANEESSRSHAILQLVIKRSADGSESKPARVIGKLSFIDLAGSERGADTTDNDKQTRIEGAEINKSLLALKECIRGLDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGSCEHTLNTLRYADRVKSLSKGNSSRRDPLSSSNRRDSTVFPVIPHDDTFEDETTYVSSERNQFGWSKQPEREPSPSNNVDRVASGRFKGNLAPSVYSDQQRGQRGIQNGRTEKENDYLAPTYGQDRTRKTSKRVDNNQLSTVEDKRKIDSRSKHVNLSHVENTYSDPDDDFNALLKDEEDLVTAHRRQVEETVDIVREEMNLLFQADQPGNQLDDYISKLDTILSQKAAGIFQLQAQLAQFQRRLNEYNIFSSSGD 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03928 676 PRINTS Kinesin heavy chain signature 304 321 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre4g03928 676 PRINTS Kinesin heavy chain signature 388 409 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre4g03928 676 PRINTS Kinesin heavy chain signature 338 356 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre4g03928 676 PRINTS Kinesin heavy chain signature 195 216 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre4g03928 676 PANTHER KINESIN-RELATED PROTEIN 6 33 672 IPR027640 GO:0003777|GO:0007018
Trre4g03928 676 MobiDBLite consensus disorder prediction 437 567 - -
Trre4g03928 676 MobiDBLite consensus disorder prediction 475 503 - -
Trre4g03928 676 FunFam Kinesin-like protein 96 441 - -
Trre4g03928 676 ProSitePatterns Kinesin motor domain signature. 337 348 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre4g03928 676 ProSiteProfiles Kinesin motor domain profile. 115 438 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre4g03928 676 MobiDBLite consensus disorder prediction 546 567 - -
Trre4g03928 676 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 438 IPR027417 -
Trre4g03928 676 MobiDBLite consensus disorder prediction 442 458 - -
Trre4g03928 676 SMART kinesin_4 113 444 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre4g03928 676 Pfam Kinesin motor domain 121 437 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre4g03928 676 Gene3D Kinesin motor domain 95 441 IPR036961 -
Trre4g03928 676 CDD KISc_KIF2_like 115 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03928 Trre-Chr4 47426888 47432387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03928 114 438 Calmodulin-binding Proteins AT5G65930 34.925 3.73e-43 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03928 K10393 - gmx:100775562 1099.73