Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03922 ATGTTCAAATTCCTTAAAGAAGTTGTTGGTGGATCTGGAACTGGTATCAAAGATCTTCCATATAACATCGGTGAACCTTATCCTTCTGCTTGGGGCTCTTGGCTTCATCATCGCGGTACATCCAAGGATGACGGCTCACCGGTTTCGATTTTTTCATTATCTGGAAGCAATGCACAGGATGGACATTTAGCTGCCGGTCGTAACGGTGTCAAGCGTCTACGAACTGTTAGGCATCCAAATATTTTGTCGTTTCTTCATAGTACTGAGATCGAAACTTTTGATGGCGGTTCTTCTAAGGTTACAATTTATATTGTGACTGAACCTGTAATGCCACTGTCAGATAAGATTAAGGAGTTAGGTCTTGATGGTACACAAAGGGATGAATATTATGCTTGGGGACTGAATCAGATAGCGAAAGCCGTGAGCTTCTTAAATAATGATTGTAAACTTGTTCATGGCAATGTTTGCTTGGCTAGTGTTGTTGTGACACAAACTCTGGATTGGAAACTCCATGCTTTTGATGTTCTATCAGAGTTTGATGGGAGTAACGAGACATCCTCTACGCAAATGCTGCAATATGCATGGCTTGTTGCAACACAGTACAAATCAATGGAGCTGGCAAAATCCGACTGGGCTGTAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGGCTGTCTAATCTACGAGCTATTCTCTGGTTTGAAGTTGAGCAAAACAGAGGAGTTACGCAACACTGGCTCCATTCCAAAGTCTCTGCTTCCAGATTACCAGCGGCTACTCAGTTCCACGCCTTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGAGTATTTTCAAAATAAGTTGGTAGACACAATACATTTCATGGAAATTCTTAGTTTGAAAGATAGTGTTGAGAAGGACACTTTCTTCCGCAAGCTTCCAAATTTAGCAGAGCAGCTTCCTCGTCAGATTGTGTTAAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTGCTGCCCCTGCTTTGACTGCATTGTTGAAAATGGGTTCCTGGCTTTCAGCTGAGGAGTTCCGTGTCAAGGTTCTTCCAACAATAATTAAACTCTTTGCCTCCAATGATCGAGCTGTCCGTGTTAGCCTTCTTCAACATATTGATCAATACGGAGAGTCATTATCAGCTCAAGCTGTTGATGAACAGGTTTACCCTCATGTTGCTACTGGTTTCTCTGATACATCTGCTTTTTTGAGGGAGCTTACTCTCAAGTCCATGTTAGTTCTGGCTCCGAAGCTGTCTCAAAGGACCTTGTCTGGATCATTATTAAAGCATTTATCAAAGTTACAGGTCGATGAAGAGCCAGCAATACGAACAAATACAACTATCCTGCTAGGAAATATTGCAAGCTACTTAAACGAAGGGACAAGAAAAAGAGTGTTGATTAATGCATTTACAGTCCGTGCTTTACGTGATACCTTTCCACCTGCTAGAGGAGCAGGCATTATGGCTTTATGTGCCACCAGTTCCAACTATGACATCACTGAAATTGCCACTCGGATTCTTCCTAATGTTGTTGTACTCACAATTGATCCTGACAGTGATGTTCGATCCAAGGCATTTCAAGCTATTGATCAATTTTTGCAGATGGCAAAGCAACATTATGAAAAGACAAATATAGCAGATACTACTGGAGGTGCAGGAATGGAAAGTTCATCAATTCCGGGAAATGCAAGTTTACTTGGATGGGCTATGAGCTCCTTGACTCTGAAGGGCAAACCTTCTGATCATGCTCCAGTTGCTTCTGTGAGTTCTAGTGCCCTTACACCAACATCTTCTAATGCCAGCTCAGATATTCCTTCAACAGCACCTATCCGTGTAAATTCCACACCAGATTTCACTGAGCACCATGCCCCTACATCTCCTACATCAACGGATGGCTGGGGAGAGCTAGAGAATGGAATCGATGAGGAACCTGAAAATGACAAGGATGGGTGGGATGATATAGAACCACTTGAAGAAACAAAGCCAACTCCAGCTCTTGCTAACATTCAAGCAGCTCAAAGACGGCCAGTTTCTCAACCTGCTTCACATGTAAAAGCTCCAATTTTACGACCCAAAAGTACATCAAAGTTGAGCAAGGATGAAGATGATGATTTGTGGGGTGCCATAGCAGCTCCTGCTCCAAAAACATCAAAACCTTTAAATTTGAAATCGACAGCAACTGATGATGATGATCCCTGGGCTGCCATTGCAGCTCCCGCGCCCACTACAAGGGCCAAGCCCTTGTCAGCTGGCAGAGGTCGGGGAGCCAAACCCGCCGCTCCAAAATTAGGTGCTCAGCGGATAAGCCGGACATCATCCGGGACATAA 2379 0.4338 MFKFLKEVVGGSGTGIKDLPYNIGEPYPSAWGSWLHHRGTSKDDGSPVSIFSLSGSNAQDGHLAAGRNGVKRLRTVRHPNILSFLHSTEIETFDGGSSKVTIYIVTEPVMPLSDKIKELGLDGTQRDEYYAWGLNQIAKAVSFLNNDCKLVHGNVCLASVVVTQTLDWKLHAFDVLSEFDGSNETSSTQMLQYAWLVATQYKSMELAKSDWAVIKKSPPWAIDSWGMGCLIYELFSGLKLSKTEELRNTGSIPKSLLPDYQRLLSSTPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAAPALTALLKMGSWLSAEEFRVKVLPTIIKLFASNDRAVRVSLLQHIDQYGESLSAQAVDEQVYPHVATGFSDTSAFLRELTLKSMLVLAPKLSQRTLSGSLLKHLSKLQVDEEPAIRTNTTILLGNIASYLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSNYDITEIATRILPNVVVLTIDPDSDVRSKAFQAIDQFLQMAKQHYEKTNIADTTGGAGMESSSIPGNASLLGWAMSSLTLKGKPSDHAPVASVSSSALTPTSSNASSDIPSTAPIRVNSTPDFTEHHAPTSPTSTDGWGELENGIDEEPENDKDGWDDIEPLEETKPTPALANIQAAQRRPVSQPASHVKAPILRPKSTSKLSKDEDDDLWGAIAAPAPKTSKPLNLKSTATDDDDPWAAIAAPAPTTRAKPLSAGRGRGAKPAAPKLGAQRISRTSSGT 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03922 792 MobiDBLite consensus disorder prediction 653 670 - -
Trre4g03922 792 MobiDBLite consensus disorder prediction 688 792 - -
Trre4g03922 792 MobiDBLite consensus disorder prediction 601 650 - -
Trre4g03922 792 Gene3D - 282 561 IPR011989 -
Trre4g03922 792 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Trre4g03922 792 SUPERFAMILY ARM repeat 293 552 IPR016024 -
Trre4g03922 792 SUPERFAMILY Protein kinase-like (PK-like) 37 287 IPR011009 -
Trre4g03922 792 MobiDBLite consensus disorder prediction 596 675 - -
Trre4g03922 792 ProSiteProfiles Protein kinase domain profile. 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03922 792 ProSiteProfiles HEAT repeat profile. 366 404 IPR021133 -
Trre4g03922 792 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 11 771 - -
Trre4g03922 792 ProSiteProfiles HEAT repeat profile. 523 561 IPR021133 -
Trre4g03922 792 SMART serkin_6 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03922 792 Gene3D Transferase(Phosphotransferase) domain 1 110 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03922 Trre-Chr4 47374751 47387569 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03922 70 291 MAP Kinase Kinase Kinase AT5G66850 23.932 1.26e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Trre4g03922 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03922 K08876 - gmx:100792884 1315.83