Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03921 ATGTTCAAATTCCTTAAAGAAGTTGTTGGTGGATCTGGAACTGGTATCAAAGATCTTCCATATAACATCGGTGAACCTTATCCTTCTGCTTGGGGCTCTTGGCTTCATCATCGCGGTACATCCAAGGATGACGGCTCACCGGTTTCGATTTTTTCATTATCTGGAAGCAATGCACAGGATGGACATTTAGCTGCCGGTCGTAACGGTGTCAAGCGTCTACGAACTGTTAGGCATCCAAATATTTTGTCGTTTCTTCATAGTACTGAGATCGAAACTTTTGATGGCGGTTCTTCTAAGGTTACAATTTATATTGTGACTGAACCTGTAATGCCACTGTCAGATAAGATTAAGGAGTTAGGTCTTGATGGTACACAAAGGGATGAATATTATGCTTGGGGACTGAATCAGATAGCGAAAGCCGTGAGCTTCTTAAATAATGATTGTAAACTTGTTCATGGCAATGTTTGCTTGGCTAGTGTTGTTGTGACACAAACTCTGGATTGGAAACTCCATGCTTTTGATGTTCTATCAGAGTTTGATGGGAGTAACGAGACATCCTCTACGCAAATGCTGCAATATGCATGGCTTGTTGCAACACAGTACAAATCAATGGAGCTGGCAAAATCCGACTGGGCTGTAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGGCTGTCTAATCTACGAGCTATTCTCTGGTTTGAAGTTGAGCAAAACAGAGGAGTTACGCAACACTGGCTCCATTCCAAAGTCTCTGCTTCCAGATTACCAGCGGCTACTCAGTTCCACGCCTTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGAGTATTTTCAAAATAAGTTGGTAGACACAATACATTTCATGGAAATTCTTAGTTTGAAAGATAGTGTTGAGAAGGACACTTTCTTCCGCAAGCTTCCAAATTTAGCAGAGCAGCTTCCTCGTCAGATTGTGTTAAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTGCTGCCCCTGCTTTGACTGCATTGTTGAAAATGGGTTCCTGGCTTTCAGCTGAGGAGTTCCGTGTCAAGGTTCTTCCAACAATAATTAAACTCTTTGCCTCCAATGATCGAGCTGTCCGTGTTAGCCTTCTTCAACATATTGATCAATACGGAGAGTCATTATCAGCTCAAGCTGTTGATGAACAGGTTTACCCTCATGTTGCTACTGGTTTCTCTGATACATCTGCTTTTTTGAGGGAGCTTACTCTCAAGTCCATGTTAGTTCTGGCTCCGAAGCTGTCTCAAAGGACCTTGTCTGGATCATTATTAAAGCATTTATCAAAGTTACAGGTCGATGAAGAGCCAGCAATACGAACAAATACAACTATCCTGCTAGGAAATATTGCAAGCTACTTAAACGAAGGGACAAGAAAAAGAGTGTTGATTAATGCATTTACAGTCCGTGCTTTACGTGATACCTTTCCACCTGCTAGAGGAGCAGGCATTATGGCTTTATGTGCCACCAGTTCCAACTATGACATCACTGAAATTGCCACTCGGATTCTTCCTAATGTTGTTGTACTCACAATTGATCCTGACAGTGATGTTCGATCCAAGGCATTTCAAGCTATTGATCAATTTTTGCAGATGGCAAAGCAACATTATGAAAAGACAAATATAGCAGATACTACTGGAGGTGCAGGAATGGAAAGTTCATCAATTCCGGGAAATGCAAGTTTACTTGGATGGGCTATGAGCTCCTTGACTCTGAAGGGCAAACCTTCTGATCATGCTCCAGTTGCTTCTGTGAGTTCTAGTGCCCTTACACCAACATCTTCTAATGCCAGCTCAGTTGTAGATATTCCTTCAACAGCACCTATCCGTGTAAATTCCACACCAGATTTCACTGAGCACCATGCCCCTACATCTCCTACATCAACGGATGGCTGGGGAGAGCTAGAGAATGGAATCGATGAGGAACCTGAAAATGACAAGGATGGGTGGGATGATATAGAACCACTTGAAGAAACAAAGCCAACTCCAGCTCTTGCTAACATTCAAGCAGCTCAAAGACGGCCAGTTTCTCAACCTGCTTCACATGTAAAAGCTCCAATTTTACGACCCAAAAGTACATCAAAGTTGAGCAAGGATGAAGATGATGATTTGTGGGGTGCCATAGCAGCTCCTGCTCCAAAAACATCAAAACCTTTAAATTTGAAATCGACAGCAACTGATGATGATGATCCCTGGGCTGCCATTGCAGCTCCCGCGCCCACTACAAGGGCCAAGCCCTTGTCAGCTGGCAGAGGTCGGGGAGCCAAACCCGCCGCTCCAAAATTAGGTGCTCAGCGGATAAGCCGGACATCATCCGGGACATAA 2385 0.4335 MFKFLKEVVGGSGTGIKDLPYNIGEPYPSAWGSWLHHRGTSKDDGSPVSIFSLSGSNAQDGHLAAGRNGVKRLRTVRHPNILSFLHSTEIETFDGGSSKVTIYIVTEPVMPLSDKIKELGLDGTQRDEYYAWGLNQIAKAVSFLNNDCKLVHGNVCLASVVVTQTLDWKLHAFDVLSEFDGSNETSSTQMLQYAWLVATQYKSMELAKSDWAVIKKSPPWAIDSWGMGCLIYELFSGLKLSKTEELRNTGSIPKSLLPDYQRLLSSTPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAAPALTALLKMGSWLSAEEFRVKVLPTIIKLFASNDRAVRVSLLQHIDQYGESLSAQAVDEQVYPHVATGFSDTSAFLRELTLKSMLVLAPKLSQRTLSGSLLKHLSKLQVDEEPAIRTNTTILLGNIASYLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSNYDITEIATRILPNVVVLTIDPDSDVRSKAFQAIDQFLQMAKQHYEKTNIADTTGGAGMESSSIPGNASLLGWAMSSLTLKGKPSDHAPVASVSSSALTPTSSNASSVVDIPSTAPIRVNSTPDFTEHHAPTSPTSTDGWGELENGIDEEPENDKDGWDDIEPLEETKPTPALANIQAAQRRPVSQPASHVKAPILRPKSTSKLSKDEDDDLWGAIAAPAPKTSKPLNLKSTATDDDDPWAAIAAPAPTTRAKPLSAGRGRGAKPAAPKLGAQRISRTSSGT 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03921 794 MobiDBLite consensus disorder prediction 692 794 - -
Trre4g03921 794 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Trre4g03921 794 SUPERFAMILY Protein kinase-like (PK-like) 37 287 IPR011009 -
Trre4g03921 794 ProSiteProfiles Protein kinase domain profile. 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03921 794 ProSiteProfiles HEAT repeat profile. 366 404 IPR021133 -
Trre4g03921 794 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 11 773 - -
Trre4g03921 794 Gene3D - 282 561 IPR011989 -
Trre4g03921 794 MobiDBLite consensus disorder prediction 596 668 - -
Trre4g03921 794 ProSiteProfiles HEAT repeat profile. 523 561 IPR021133 -
Trre4g03921 794 SUPERFAMILY ARM repeat 293 552 IPR016024 -
Trre4g03921 794 SMART serkin_6 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03921 794 MobiDBLite consensus disorder prediction 601 652 - -
Trre4g03921 794 Gene3D Transferase(Phosphotransferase) domain 1 110 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03921 Trre-Chr4 47374751 47387569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03921 70 291 MAP Kinase Kinase Kinase AT5G66850 23.932 1.36e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Trre4g03921 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03921 K08876 - gmx:100792884 1322.38