Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03913 ATGCCAACACGATCAACAGGAGCAATAGCACAAGATTGGGAACCAGTTGTTCTCCACAAATCAAAACCAAAAGCACAAGACCTTCGTAATCCAAAAGCCGTAAACCAAGCACTTCGAACCGGAGCCGAAGTTTTAACGGTTAAAAAATTCGACGCCGGTTCGAATAAAAAAACCGCCGGTCCTGTTGTTTACGCGAGGAAATTAGATGAAGCGGCTGAACCGGCTGCGTTGGAACGAGTTGCTGGGGAAGTGAGACACACGATTCAGAAAGCGCGTTTGGATAAGAAAATGAGTCAAGCTGAGTTGGCGAAATTGATTAATGAGAGGGTTCAGGTTGTTCAGGAATATGAGAATGGTAAAGCTGTTCCTAATCAGGTTGTTTTGGGGAAAATGGAGAGAATTCTTGGGGTTAAACTTAGGGGTAAAATTGGAAAATGA 438 0.4384 MPTRSTGAIAQDWEPVVLHKSKPKAQDLRNPKAVNQALRTGAEVLTVKKFDAGSNKKTAGPVVYARKLDEAAEPAALERVAGEVRHTIQKARLDKKMSQAELAKLINERVQVVQEYENGKAVPNQVVLGKMERILGVKLRGKIGK 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03913 145 CDD HTH_XRE 88 139 IPR001387 -
Trre4g03913 145 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 11 142 - -
Trre4g03913 145 SMART mbf_short4 87 142 IPR001387 -
Trre4g03913 145 Pfam Helix-turn-helix 88 139 IPR001387 -
Trre4g03913 145 Coils Coil 88 108 - -
Trre4g03913 145 Gene3D - 72 145 IPR010982 GO:0003677
Trre4g03913 145 SUPERFAMILY lambda repressor-like DNA-binding domains 85 139 IPR010982 GO:0003677
Trre4g03913 145 Pfam Multiprotein bridging factor 1 11 80 IPR013729 -
Trre4g03913 145 FunFam Multiprotein bridging factor 1 72 145 - -
Trre4g03913 145 ProSiteProfiles Cro/C1-type HTH domain profile. 88 142 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03913 Trre-Chr4 47246733 47247170 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Trre4g03913 MBF1 9.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03913 K03627 - cpap:110818571 231.106