Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03910 ATGGAAGACGATGATAGATACCCATCAAAAGGATACCCATTGAGACGCAAAAACCCTAATCTTCGTCTAAAACACCCAATTCGCAATTTACAATATCATCGCTACAACGATCCCGAAAACAACAACAACATCGATGAAGAATACGAAGAATTCGACGATTATAATATACATGATGACGGAATTGAAAATGGGTATATCGGTAATTTCGAAGAAAACGAAGGATTCATCGGTAAAAAGAGAAAATTGCGTAGCGGTGGTAGCAGTAGTGGTGGCGGTGGTGGTAGTTCTGTTTCAAACTATGAATTGGTGCCACGTGGCAAATTCTCATACAATAATCGCGGCGGTGGTGGCGGCGTTGGTGGTGGTGGTTGTTCTTCTGGGTCAGAGGAATGGACAGAACATGCAACATTTGTGTTGTTAGAGATTTGGGGTGAAAAGTTTCTTCAACTTGGAAGAAACAGTTTGAGATCAGAGGAATGGCATGAAGTATCTGAGAAAGTTTCTGAAGAATTGAAAATTGAAAGAAGTGTTGAACAATGTAGAAGTGTATTAGATAAAGTGAAAAGAAGGTATAAGAAAGAGAAGAGTAGAATGGATGAAATGGGTTTGGGAGTAAATTCTTGTAAGTGGCCATTTTTCAAGAGAATGGATATGTTGATGTCTTCGAGTGCGAGACAAGAGTATGGACTTGCTTGTGGTGTTGATTCGGGGGAATATGTGTTTATGAATACTCGGGTTTATTTGAATAGGTCGAATGGTTTTGATGAGATGAGGGATAGTCCTGGTGAGTCTGAGGCATCTGAGGATGATAAGGGAGATGAGGAGGATGGTGATGATGATGATTTCGATGAGGTTGATACGGAAGAGGAGGAGGCTTCTTATAGGGTTTTGGCTGATTCTATTCAGAAGTTTGGGAAGATATATGAGAAGATTGAGAATACTAAGAGGCAACAGATGATGGAGTTGGAGAAGATGAGGGTGGATTTTAATAGGGAATTGGAGTTGCAGAAGAAGCAGATTTTGGAAAGGGCGCAGGTTGAAATATCGAAAATACAGGAACCGGGAGATGATGGTCATGATGAAGAGGTGGAGGATGAGGAAGACACAGGCACTTCTGCAGATAATCTCAGTGAATAA 1137 0.409 MEDDDRYPSKGYPLRRKNPNLRLKHPIRNLQYHRYNDPENNNNIDEEYEEFDDYNIHDDGIENGYIGNFEENEGFIGKKRKLRSGGSSSGGGGGSSVSNYELVPRGKFSYNNRGGGGGVGGGGCSSGSEEWTEHATFVLLEIWGEKFLQLGRNSLRSEEWHEVSEKVSEELKIERSVEQCRSVLDKVKRRYKKEKSRMDEMGLGVNSCKWPFFKRMDMLMSSSARQEYGLACGVDSGEYVFMNTRVYLNRSNGFDEMRDSPGESEASEDDKGDEEDGDDDDFDEVDTEEEEASYRVLADSIQKFGKIYEKIENTKRQQMMELEKMRVDFNRELELQKKQILERAQVEISKIQEPGDDGHDEEVEDEEDTGTSADNLSE 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03910 378 Gene3D - 131 193 - -
Trre4g03910 378 MobiDBLite consensus disorder prediction 253 293 - -
Trre4g03910 378 Coils Coil 308 339 - -
Trre4g03910 378 MobiDBLite consensus disorder prediction 266 290 - -
Trre4g03910 378 MobiDBLite consensus disorder prediction 358 372 - -
Trre4g03910 378 Pfam Myb/SANT-like DNA-binding domain 129 218 IPR044822 -
Trre4g03910 378 MobiDBLite consensus disorder prediction 346 378 - -
Trre4g03910 378 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 122 353 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03910 Trre-Chr4 47215320 47216456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03910 259 353 Trihelix Transcription Factor Family AT3G14180 35.922 5.24e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre4g03910 Myb_DNA-bind_4 1.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03910 - - ccaj:109813475 419.853