Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03902 ATGAAGAATAAAGAGCATTGTTCTTATGTTATTGTTCTTTTTTCATTCTTCCTAGGTTTAACAACACTAGTAACATCATCATCATCTTCAAGTGTTGTTTCATCTTATCATGGGTCCCACCACTCTTTCCAATTCCAACAACATCATGAACTCACACAAGCTGAAACCATGTACATCAAACATCGACAACTTCTTTACTATAGAGATGAATTTGGTGAACGAGGTGAAAATGTTACGGTGGATCCAACCTTAGTTTTCTCAAACAACCGCATCAAAAACGCTTACGTGGCGTTACAAGCTTGGAAACAAGCTATTCTTTCTGATCCAAATAACTGTACTGTTAATTGGGTAGGTTCCAATGTATGCAACTACACAAATGTTTTCTGTGCACCCGCATTGGATAACCCTAAAATTATAACCATCGCCGGAATCGATCTAAATCACTGTGATATCGCCGGTTATTTACCGGAAGAGCTCGGTCTTTTAACCGATCTTGCTCTTTTCCATGTCAATACTAATCGATTCTGTGGAACGGTTCCTCATAAATTTGAGAAGCTGAAAATCTTGTTTGAGTTGGATCTGAGTAATAACCGTTTCGCCGGTAAGTTTCCGGAAGTTGTTCTCCGGTTACCGGAGTTGAAGTTTTTAGATCTGAGGTTTAATGAATTCGAAGGAACTGTACCGAAAGAGCTTTTCGATAAAGATTTGGATGCGATTTTCATCAATCATAATCGATTTGTTTTCGATTTACCGGATAATTTCGGTAATTCACCAGTTTCGGTTATTGTTCTGGCGAATAACCGTTTTCACGGTTGTTTACCGGCGGGGATTGGTAACATGACGAATTTGAATGAGATAATTGCAATGAATAACGGTTTTCAGTCGTGTTTGCCGGCGGAGATTGGGTTGTTGAAGAATTTGACGGTGTTTGATGTTAGTTTTAATAAGTTTTTGGGACCGTTACCGGAAGCGGTTGGAAATGCGGTGAGTTTGGAGGTGTTGAATGTGGCGCATAATTTTCTTTCCGGTAAGATACCGGAGAGTATTTGTGCGTTACCGAATTTGCAAAACTTTACTTATTCTTATAATTTCTTTACCGGTGAACCGCCGAGATGTTTGGCTTTGCCGGAAGTGGATGATAAGAGGAATTGTTTGCCGGCGAGAAGGAATCAACGGTCGGCGAAGGAATGTAAGTCGTTTTTGTCTCACCGTGTTGATTGTAGCTCTTTTAGGTGTAAAGCTTTTGTACCTTCTTTGCCTTCACCACCACCTTCGCCGGTGTTTCCTCCTCCTGTTGTTACTCCAATATCTCCTCCGCCACCGCCGGTGGTGGTTTCTCCACCACCGTCGCCAGTATTTTCTCCACCGCCGCCACCACCAACACCTGTGTTTTCTCCACCACCACCAGTTTACTCTCCACCGCCGCCGCCACCTCCTTCACCACCACCACCTTCACCGCCACCACCACCTCCACCAGTGTATTCACCACCTCCGCCACCACCATCACCCCCACCACCTTCTCCACCACCACCACCTCCACCGGTGTATTCACCACCACCACCTCCACCGGTATATTCACCACCACCTCCTCCACCAGTATATTCTCCACCACCACCCCCTCCCTCACCGCCGCCACCATCTCCCCCTCCTCCAGTTTACTTACCACCACCACCTCCACCGCCTCCACCACCACCTTCACCAATTCCTTCACCACCATATTGTGTTAGGTCTCCGCCACCTCCACCGCCAAATTCACCACCTCCACCGGCTCCTGTATTCTCCCCACCACCACCTGTACCTTACTACTATAGCTCACCACCTCCACCACCTTCTCATTCACCTCCACCGCCACCTCATTCACCTCCACCACCTCACTCTCCTCCTCCACCTGTTTATCCCTATTTATCTCCCCCACCACCTCCTCCAGTTCACTCACCTCCACCACCAGTCCATTCCCCACCACCGCCATCTCCACCACCTTGTATAGAACCACCACCACCTCCATCACCTCCACCTTGTGAAGAACACTCACCTCCACCACCATATCAAACACCTTATCATCCACCACCATCTCCATCACCACCTCCCTCACCAGTCTATGCCTCACCACCTCCACCACCAGTTTATTATTCACCTCCACCAGTTCATTACAATTCACCACCACCACCACCACCACCGGTATATTCTTCGCCTCCTCCACCGGTTCATTACAATTCACCACCACCACCACCGGTATATTCTTCGCCTCCACCACCGGTCTATTCACCACCACCCACACCTGTATATGAAGGGCCATTACCACCAGTTGTTGGAATATCATATGCATCACCACCACCACCACCCTTTTATTGA 2352 0.4732 MKNKEHCSYVIVLFSFFLGLTTLVTSSSSSSVVSSYHGSHHSFQFQQHHELTQAETMYIKHRQLLYYRDEFGERGENVTVDPTLVFSNNRIKNAYVALQAWKQAILSDPNNCTVNWVGSNVCNYTNVFCAPALDNPKIITIAGIDLNHCDIAGYLPEELGLLTDLALFHVNTNRFCGTVPHKFEKLKILFELDLSNNRFAGKFPEVVLRLPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFVFDLPDNFGNSPVSVIVLANNRFHGCLPAGIGNMTNLNEIIAMNNGFQSCLPAEIGLLKNLTVFDVSFNKFLGPLPEAVGNAVSLEVLNVAHNFLSGKIPESICALPNLQNFTYSYNFFTGEPPRCLALPEVDDKRNCLPARRNQRSAKECKSFLSHRVDCSSFRCKAFVPSLPSPPPSPVFPPPVVTPISPPPPPVVVSPPPSPVFSPPPPPPTPVFSPPPPVYSPPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPVYSPPPPPPVYSPPPPPPSPPPPSPPPPVYLPPPPPPPPPPPSPIPSPPYCVRSPPPPPPNSPPPPAPVFSPPPPVPYYYSSPPPPPSHSPPPPPHSPPPPHSPPPPVYPYLSPPPPPPVHSPPPPVHSPPPPSPPPCIEPPPPPSPPPCEEHSPPPPYQTPYHPPPSPSPPPSPVYASPPPPPVYYSPPPVHYNSPPPPPPPVYSSPPPPVHYNSPPPPPVYSSPPPPVYSPPPTPVYEGPLPPVVGISYASPPPPPFY 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03902 783 MobiDBLite consensus disorder prediction 464 513 - -
Trre4g03902 783 Gene3D Ribonuclease Inhibitor 95 256 IPR032675 -
Trre4g03902 783 PRINTS Proline rich extensin signature 414 426 - -
Trre4g03902 783 PRINTS Proline rich extensin signature 457 469 - -
Trre4g03902 783 PRINTS Proline rich extensin signature 435 451 - -
Trre4g03902 783 PRINTS Proline rich extensin signature 469 490 - -
Trre4g03902 783 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 25 538 - -
Trre4g03902 783 MobiDBLite consensus disorder prediction 641 700 - -
Trre4g03902 783 MobiDBLite consensus disorder prediction 606 629 - -
Trre4g03902 783 Gene3D Ribonuclease Inhibitor 257 384 IPR032675 -
Trre4g03902 783 FunFam Leucine-rich repeat extensin-like protein 1 95 256 - -
Trre4g03902 783 FunFam Leucine-rich repeat extensin-like protein 5 257 396 - -
Trre4g03902 783 MobiDBLite consensus disorder prediction 533 556 - -
Trre4g03902 783 Pfam Leucine Rich Repeat 330 352 IPR001611 GO:0005515
Trre4g03902 783 SUPERFAMILY L domain-like 95 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03902 Trre-Chr4 47061845 47064196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03902 41 462 Leucine-rich Repeat extension Gene Families AT3G24480 68.471 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03902 - - ccaj:109813452 650.973