Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03899 ATGGCGAGTCGAGTTAAAGAAGACGAGAAAAACGAGCGACTGATTCGAGGTCTTCTTAGACTCGAACCGAATCGAAGATGTATTAACTGTAATAGTTTGGGACCACAATATGTGTGCACAAATTACTGGACGTTTGTTTGCACTAATTGTAGTGGAATACACCGTGAATTCACACATCGTGTGAAATCAGTTTCAATGGCTAAATTTACTTCGCAAGAAGTTACTGCACTTCAAGAAGGAGGAAATCAGCAAGGAAATTCCAGCGTTGACAATTGGGCTTCTTTTGATGTTGCTTCTGAGGCGAAAGCAAATCCAACCTCAAATTTAAATCCACTTGAATCTGAATTGTCCCAATTGTCTATGCCAGCATCCTTACCTTCTCATGCTTCAGGAGTCCAAGGACCTAATCCACCCAGTGGTGCTTCGGTTCCATTTCCCGGATTGGCAACTGTATCATCTCTTGATAATGTAGGACATTGGGCCAGTTCGCAGCATCAACAACCAACATTCCCCACCGTTGCTAGTCAACAATTTCCACCGTCAGTAGGCAGTGCTGTAGATAGTCAGCCATCACATGTACCTTCTGCTGTAGAAGTAAAACCAAGTGGAAGAACAGAACTTCCCAAAGATTTGTTCACTGTAAAACACTCGCCCTTCCCGGCTCCAGGTCTAGGTTGGCAAACGGGTCTTCCCCAGGGCATGGGCATCTCAATGCAATATTATAATGTGATGCCCGTGCCAAGTTTTTCGCAGCCATCAAGGTCAACAAATCCATTTGATGTCAGCAGCAAACAAACCCCAGATCAAGCCCCAAGTTTTCCTTCCATGTCATCCTTGCATGGTGCCGTGCCTAATATACCACCTTCAGGCACTATGTACCCTTCAAGCCAGGGCAATCCATCCCGTGCCTGGACTCCAACCCCATCGTCATCATATGCATCAGTCCTACCTCAACAAGCACACACTCATGCATCAACATTGGGAGCAGGGTCATACATGGGGCAACAAACGGCAACCAACATACCAATGCCAAGGCAAGAAACTGGGAACTTTGGAACTGAGGGAGACATTTTCGGCTTTTCAAATCCAGATCAGCAGCTGACTCATAGGCCGTCAACCACTCCCACCTCTAACCCCTACCCTAAAGGAGGGAACCCATTCGGATAA 1167 0.4636 MASRVKEDEKNERLIRGLLRLEPNRRCINCNSLGPQYVCTNYWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVTALQEGGNQQGNSSVDNWASFDVASEAKANPTSNLNPLESELSQLSMPASLPSHASGVQGPNPPSGASVPFPGLATVSSLDNVGHWASSQHQQPTFPTVASQQFPPSVGSAVDSQPSHVPSAVEVKPSGRTELPKDLFTVKHSPFPAPGLGWQTGLPQGMGISMQYYNVMPVPSFSQPSRSTNPFDVSSKQTPDQAPSFPSMSSLHGAVPNIPPSGTMYPSSQGNPSRAWTPTPSSSYASVLPQQAHTHASTLGAGSYMGQQTATNIPMPRQETGNFGTEGDIFGFSNPDQQLTHRPSTTPTSNPYPKGGNPFG 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03899 388 MobiDBLite consensus disorder prediction 347 388 - -
Trre4g03899 388 SMART arf_gap_3 12 116 IPR001164 GO:0005096
Trre4g03899 388 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 87 IPR001164 GO:0005096
Trre4g03899 388 MobiDBLite consensus disorder prediction 249 312 - -
Trre4g03899 388 Pfam Putative GTPase activating protein for Arf 14 89 IPR001164 GO:0005096
Trre4g03899 388 MobiDBLite consensus disorder prediction 159 191 - -
Trre4g03899 388 PANTHER ARFGAP/RECO-RELATED 86 388 IPR044820 GO:0005096
Trre4g03899 388 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Trre4g03899 388 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Trre4g03899 388 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Trre4g03899 388 MobiDBLite consensus disorder prediction 159 204 - -
Trre4g03899 388 MobiDBLite consensus disorder prediction 120 147 - -
Trre4g03899 388 Gene3D Arf GTPase activating protein 1 115 IPR038508 -
Trre4g03899 388 MobiDBLite consensus disorder prediction 120 137 - -
Trre4g03899 388 MobiDBLite consensus disorder prediction 359 381 - -
Trre4g03899 388 SUPERFAMILY ArfGap/RecO-like zinc finger 11 89 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03899 Trre-Chr4 47029230 47035581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03899 12 87 C2H2 Transcription Factor Family AT4G05330 37.500 2.63e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03899 - - gmx:100817254 374.4