Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03892 ATGACTGTAAAGAAACAGGACTCGAAAAAGGTTTCTGGCCTCGGCAATCAATGTTCGAGGAAGCAACATCGCAAGGGAGAAAACCCTATTCGATTTGTACCAGCTGCTGACCCTCCTCTTGATAATGGACATTCAAACTCATGGATCTGCAAGAACTCCGCTTGCAGGGCAGTTTTGTCCAAAGAGGATACATTCTGTAGACGGTGCTCGTGCTGTATTTGCCATCTTTTCGACGACAACAAGGATCCTAGTCTTTGGTTGGTATGCAGTGAATCTTCTCAAGGGGACTCATGCGGGTTATCTTGCCATATTGAGTGTGCTCTTCAACATGAGAAAGTAGGAGTTGTTGATCATGGACAGCTTATGCAGCTCGATGGTGGTTATTGTTGTGCCTCCTGCGGTAAAGTTACCGGCATACTTGGATGCTGGAAGAAGCAGCTAAATATAGCGAAAGATGCTCGGCGTGTGGATGTACTATGTTACAGGATATATTTGAGTTACAGGCTTCTGAACGGTACTTTGAGATTTAAAGAATTGCATGATATGGTACAAGAGGCAAAAGCTAAACTTGAAAAGGAAGTTGGTCCAGTTAACGGTGTTTCTTCCAAGATGGTACGCGGCATTGTCAGCAGACTCCCTATTGCTAGCGATGTGCAGAACCTATGTTCTCTTGCTATCGAGAAAGCTGATGAGTTGTTGGCCACCGATGACAATCCGGAATCCAAAGAGGGTTCACTTCCTGCGGCATGTAAGTTTGTGTTTGAAGAGATAACAGATTCCTCGGTCAAAATCATTCTACTTGAAATGACCAATGTAACTTCTGAGGACATTAAGGGATACAAGCTCTGGTATTACAAGACTAGGGGGGAATCACACACAGAAGAACCTGTTTGTGTGTTTCCAAATGATCAGAGGAGGATTTTGATATCCAATCTTCAGGCTTGCACGGAATATACTTTTCGGATTGTATCTTTTACAGATAACGGTGACCTCGGTCATTCTGAGGCTAAGTGTTTCACCAAAAGCGTTGAGATATTTGTAAAGAAACCGACTTCATCAATTGACATGAATACTACAAAGGAGGATACTCAAAGTGGAGGAGGCAATGAATCGGGCTCAAAACTGGAGATTGATCCCTCAATGACATACTCCGGATTCAAGGTTCGAGACCTTGGAAAGATTTTGCACCTAGCATGGGCTCAAGAACAAGGTTGCTTTGAGGGGTTCTGCCGTGCCGATATAAAAAATTGCTGTGGTCAAAGTGAAAAGATCAAAAACCCTATTAACCTGGAAGAGCGGCCGGCACCACCTTTGGTTTCTCGAGACCTTGATCTGAATGTTGTTTCTATGCCTGACTTAAACGAAGAACTCACTCCTCCTTTTGAGTCTTCTCGTGATGAAGACAATGGTTGCACTTTGCAGCAGGCTGTTGAGGCAGATGATGATGCAGCCTCTCATGATTTAGAGAAAAACCTAGCAAGGCCACATGGTAGTGGTGGTTCCGAAACCTGGAACCACAGACCAACTGGAGAAGTTCCGGCTGTTGACTCGCGCGTAGTCTTAGAAGCAAGTAGGAAAAGGGTAGCAAGTACAAATGAAGAAACACATGACTGTGACAGCACTTTAATCAACGGTTCTCCTTTACATGTATCCGATGGTTCGTTCTCCTTAGACGAGAACTTTGAGTATTGTGTTAAAGTAATTCGTTGGCTAGAATGTCAGGGTCATATCAACAAAGAGTTTAGGCTGAAATTGCTTACATGGTTTAGTTTGAGGTCGACCGAACAAGAACGTAGGGTGGTTAATACTTTCATTCAGACACTGATTGATGATCCGAGTAGTTTGGCAGGCCAATTAGTTGACTCATTTTCTGATATTATATCGAACAAGAGGCCTAGAAATGGATTCAGTAACAAGGCTGTGGCTTTAAATTAA 1935 0.4341 MTVKKQDSKKVSGLGNQCSRKQHRKGENPIRFVPAADPPLDNGHSNSWICKNSACRAVLSKEDTFCRRCSCCICHLFDDNKDPSLWLVCSESSQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLNGTLRFKELHDMVQEAKAKLEKEVGPVNGVSSKMVRGIVSRLPIASDVQNLCSLAIEKADELLATDDNPESKEGSLPAACKFVFEEITDSSVKIILLEMTNVTSEDIKGYKLWYYKTRGESHTEEPVCVFPNDQRRILISNLQACTEYTFRIVSFTDNGDLGHSEAKCFTKSVEIFVKKPTSSIDMNTTKEDTQSGGGNESGSKLEIDPSMTYSGFKVRDLGKILHLAWAQEQGCFEGFCRADIKNCCGQSEKIKNPINLEERPAPPLVSRDLDLNVVSMPDLNEELTPPFESSRDEDNGCTLQQAVEADDDAASHDLEKNLARPHGSGGSETWNHRPTGEVPAVDSRVVLEASRKRVASTNEETHDCDSTLINGSPLHVSDGSFSLDENFEYCVKVIRWLECQGHINKEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFSNKAVALN 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03892 644 MobiDBLite consensus disorder prediction 490 515 - -
Trre4g03892 644 Pfam Fibronectin type III domain 252 332 IPR003961 GO:0005515
Trre4g03892 644 MobiDBLite consensus disorder prediction 355 376 - -
Trre4g03892 644 SUPERFAMILY Fibronectin type III 252 330 IPR036116 GO:0005515
Trre4g03892 644 PANTHER VIN3-LIKE PROTEIN 2-RELATED 7 639 IPR044514 GO:0010048|GO:0040029
Trre4g03892 644 CDD FN3 251 330 IPR003961 GO:0005515
Trre4g03892 644 ProSiteProfiles Fibronectin type-III domain profile. 246 345 IPR003961 GO:0005515
Trre4g03892 644 Gene3D Immunoglobulins 240 344 IPR013783 -
Trre4g03892 644 Pfam PHD - plant homeodomain finger protein 50 167 IPR032881 -
Trre4g03892 644 MobiDBLite consensus disorder prediction 1 25 - -
Trre4g03892 644 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03892 Trre-Chr4 46969513 46973316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03892 46 635 PHD Gene Family AT3G24440 48.760 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03892 - - gmx:100780157 1081.63