Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03884 ATGTCGAGATCAATTGTTCAACCGATAGGTCAAAAGCGATTAACAAACGTAGCAGTTGTTCGTCTCAAGAAACATGGAATGCGATTCGAAATCGCTTGTTACCCTAACACCGTTCTTTCATGGCGTTCTGGAGTTGAAAAGGATATTGATGAAGTGTTGCAGTCTCATACCATTTTAAAGAAAGGGGAACTTCAGGTTGCTGGCAAAGAGAGGGAGTCGATGCTGTCTAGTCAGTTCAGGGACATTGCCACCATTGTAATGCACAAGACTTTTAATCCCGAGACTAAACGCCCTTACACTATCAGCATGATTGAACGCCTCATGAGGGATATCCATTTCGCTGTTGATCCAAACAGCACCTCCAAGAAACAGGCTCTTGAGTTGATTCAGGAGCTTCAGAAGCACTACCCTATAAAACGATGTCCATTGAGGGTACGTGCTGCTGCCCCTGAGGAGCAAGTACCTGTCCTTTTAGAAAAGCTGAGTGAGTGGAAGGCAACTGTTATTTCTCAAGAAGGGACTGCTGCTCAGTTATCTGTTGTTTTTGAACTGGAACCTGGTCTGTATAAGGATTGTCATGACTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCTCACTCTCTTTATGTGGACGGCGATACTCATGTGGATTACAATGATAATGAGGAGATGCCTGCACCACTGCCCCAAATAACTTCTGAATCTGTGCTAGAGTTGAATGATAAACTTCAAAAGCAAACAATTTCGTCCGTAACTAAACCTACTGAGGGACAACAACCAAAGCAAAACAAGTGCAACACCTGTGATGTTTTCTTTGAAGATGCTAAGCTGTACAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGTAAAACGAGGCAACTCCCTCCACTCACGGAAGAAGAGTGCACGGCCGATATGGATTTGTTTGAATCAAAATCTGATTTGAAGGATTATTCATTTTGA 984 0.4289 MSRSIVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDIDEVLQSHTILKKGELQVAGKERESMLSSQFRDIATIVMHKTFNPETKRPYTISMIERLMRDIHFAVDPNSTSKKQALELIQELQKHYPIKRCPLRVRAAAPEEQVPVLLEKLSEWKATVISQEGTAAQLSVVFELEPGLYKDCHDFVMNKMHGRFEVLAHSLYVDGDTHVDYNDNEEMPAPLPQITSESVLELNDKLQKQTISSVTKPTEGQQPKQNKCNTCDVFFEDAKLYREHHKSEWHKHNMKRKTRQLPPLTEEECTADMDLFESKSDLKDYSF 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03884 327 Pfam SBDS protein, C-terminal domain 144 207 IPR046928 -
Trre4g03884 327 Pfam SBDS protein, domain II 80 140 IPR018978 GO:0042254
Trre4g03884 327 Gene3D Classic Zinc Finger 255 314 - -
Trre4g03884 327 SUPERFAMILY beta-beta-alpha zinc fingers 263 314 IPR036236 -
Trre4g03884 327 Gene3D - 69 141 IPR037188 -
Trre4g03884 327 FunFam SBDS, ribosome maturation factor 69 141 - -
Trre4g03884 327 ProSitePatterns Zinc finger C2H2 type domain signature. 268 290 IPR013087 -
Trre4g03884 327 Gene3D - 143 220 - -
Trre4g03884 327 SUPERFAMILY Hypothetical protein AF0491, middle domain 67 140 IPR037188 -
Trre4g03884 327 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 58 IPR039100 -
Trre4g03884 327 SUPERFAMILY FYSH domain 13 67 IPR036786 -
Trre4g03884 327 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 79 IPR019783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03884 Trre-Chr4 46914273 46918595 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03884 27 327 C2H2 Transcription Factor Family AT1G43860 50.435 2.14e-112 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03884 K14574 - gmx:100797497 551.206