Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03876 ATGTTCACATCAAGGAAGAAAATCAGCAAAGATAAGGGTGCTGAGCCAACTGAATTTGAGGAATCGGTTGGACAGGCTTTGTTCGATCTAGAAAACACAAACCATGATTTGAAAAGTGAGCTGAAGGACTTATATATAAATTCAGCAGTCCAAATTGATGTTTCTGGCAACCGCAAGGCTGTGCTTATCAATGTCCCCTACAGATTGAGCAAGGTTTACCGCAAAATTCATACCAAGCTTGTTAGGGAGCTTGAGAAGAAATTTAGCGGCAAGGATGTAATCCTGATTGCCACCAGGAGGATTGTAAGGCCTCCAAAGAAAGGTTCCGCTGCTCAGCGCCCCCGCAGCCGCACACTCACCGCTGTGCACGAAGCTATTCTGGAGGATGTTGTATTACCTGCTGAGATTGTTGGAAAGCGTACTAGATACAGAGTTGATGGATCAAAGGTCATGAAGGTGTTCTTGGACCCTAAGGAGAAGAACAACACTGAATACAAGTTGGAGACATTTTCTGCAGTTTACAGAAAACTTTCAGGCAAAGATGTTGTTTTTGAGTATCCTGTTACTGAGGCTTAG 576 0.4375 MFTSRKKISKDKGAEPTEFEESVGQALFDLENTNHDLKSELKDLYINSAVQIDVSGNRKAVLINVPYRLSKVYRKIHTKLVRELEKKFSGKDVILIATRRIVRPPKKGSAAQRPRSRTLTAVHEAILEDVVLPAEIVGKRTRYRVDGSKVMKVFLDPKEKNNTEYKLETFSAVYRKLSGKDVVFEYPVTEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03876 191 Coils Coil 191 191 - -
Trre4g03876 191 PANTHER 40S RIBOSOMAL PROTEIN S7 1 190 IPR000554 GO:0003735|GO:0005840|GO:0006412
Trre4g03876 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Trre4g03876 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
Trre4g03876 191 Coils Coil 27 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03876 Trre-Chr4 46863463 46864763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03876 1 191 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 78.534 5.79e-115 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03876 K02993 - fve:101291712 342.428