Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03870 ATGCCTTTTAAATGTAGGATGACAGAACCTGCATCTACTGTGGCATCTTACAGTAGAATTATCGAGTTGGAAAGCTTGCCGCTGCCTCCTGAACTAGTAATTGGAATTGACATTGGCACCTCACCATTCTGTGTTTGTGTGTGGGACGATTCTGAAGCTGTGGTTTGGCAAAACAATATAAATGATGTAATGAAGAGATGTTGTGAAACTTCCAAAGATCATGACTTTTCTATAGGAGCTAGTAGTAGCAGCAGCAGCAGTAGTGGCAGTGAAGTCTCACTCTCCCTAGAGAATCAGGATATAATTTCAGATATGTACCTGTTTTTCAATATAATTTTTGGTGAGCGTGCAAACCTTCCATTTATGATGCACACGTTGGACATTAAGGTTCGCCCTTTTGTCGATGCATTTATGAACAAACTATGGAGAACCACTACTGCAATAGAACTACTTGCAAAATTTTTGATGGAATTAAGATCACTTGTTGAAGCTCAGCTGAACAGACATATAAAAAATGTGGTGTTTTCAGTTCCGGTTTCATTCAGTGAATTACAGAAAAACCGGATACATTGTGCTTGTGAGATGGTTGATCTTAAAGTTATCGGATTGTTGCCTCTACCAACTGCAGTGACTTGGTGTTATGCGGTTCAACAACTTCATGCTACTCCTTCTCATGAGGTTATGGAGAATGAACACAAGAAAATTGCTCTCATTTTTAATATGGATGTGGGTTATTGCGATGTTTTTGTAAGTGAAGTAGAAAGAGGAAAATTCCATATAAAAGCCTTGATAGGAAGTACTATTGGCAGAGAAGATTTGCTAGGAAATATGATGTGTTATCTCTTACCTGATTCTGAAAAGATATTCAAGAGAAATTTTCACTGGAACTCAGATATTATATCGATGGCTTATTTTCGGAGTAGAATCAATGATGTGATTACTGAGCTTTCGTCTCAGACAAGTGTTGAGGTTAATTTAAAATCAGTAGATGGTTTGAAGATACAAAGGGTTGTAACGCGGGAGGAATTTGAGGAAGTTAACAAAGAAGTGTTTGAGAAGTGTAAAAGACTAATCATCCAATGCTTGCAAGATGCAAAGATAGAAGTTGAGAATATAAATGATGTGATAATTGTTGGTGAATGTTGTAATATACCAATGGTGAAGAATCTTGTTACTAAGATATGCAATGGAAAGGAAATTTTTGAAGGTATGAATCCTTTGGTTGCTGCACTTTGTGGTTCAGCAATGGCAGGAGCTGTTTACTTATCATGA 1272 0.3719 MPFKCRMTEPASTVASYSRIIELESLPLPPELVIGIDIGTSPFCVCVWDDSEAVVWQNNINDVMKRCCETSKDHDFSIGASSSSSSSSGSEVSLSLENQDIISDMYLFFNIIFGERANLPFMMHTLDIKVRPFVDAFMNKLWRTTTAIELLAKFLMELRSLVEAQLNRHIKNVVFSVPVSFSELQKNRIHCACEMVDLKVIGLLPLPTAVTWCYAVQQLHATPSHEVMENEHKKIALIFNMDVGYCDVFVSEVERGKFHIKALIGSTIGREDLLGNMMCYLLPDSEKIFKRNFHWNSDIISMAYFRSRINDVITELSSQTSVEVNLKSVDGLKIQRVVTREEFEEVNKEVFEKCKRLIIQCLQDAKIEVENINDVIIVGECCNIPMVKNLVTKICNGKEIFEGMNPLVAALCGSAMAGAVYLS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03870 423 CDD HSP70_NBD 34 419 - -
Trre4g03870 423 Pfam Hsp70 protein 33 421 IPR013126 GO:0005524|GO:0140662
Trre4g03870 423 Gene3D - 34 418 - -
Trre4g03870 423 Gene3D - 95 153 - -
Trre4g03870 423 PRINTS 70kDa heat shock protein signature 372 388 - -
Trre4g03870 423 PRINTS 70kDa heat shock protein signature 173 193 - -
Trre4g03870 423 PRINTS 70kDa heat shock protein signature 32 45 - -
Trre4g03870 423 PRINTS 70kDa heat shock protein signature 404 423 - -
Trre4g03870 423 Gene3D Actin; Chain A, domain 4 270 353 - -
Trre4g03870 423 Gene3D - 229 401 - -
Trre4g03870 423 PANTHER HEAT SHOCK PROTEIN 70KDA 33 420 IPR013126 GO:0005524|GO:0140662
Trre4g03870 423 SUPERFAMILY Actin-like ATPase domain 32 215 IPR043129 -
Trre4g03870 423 SUPERFAMILY Actin-like ATPase domain 234 420 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03870 Trre-Chr4 46766347 46767618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03870 33 420 Calmodulin-binding Proteins AT5G02500 27.431 1.64e-36 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03870 K09489 - gmx:100809773 347.436