Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03859 ATGTTACCTCTAACATTAGCTATTCCTTCCATACTCTTTCTAATATTCATTTTTATTCTATTTCAATCAAAACATCATCAACATAATAAAAAACATCCACCTGGTCCTAAACCTTTCCCAATTATTGGCAGTCTCCACATCCTTGGAAAACTCCCACATCGTACCCTTCAATCGCTTGCCAAAAAACATGGATCAATCATGTCCTTAAAACTAGGAAAAATTCCAACCATTATAGTTTCATCACCCAAATCAGCTGAACAATTCCTCAAAACCCATGACAATATTTTCGCTAGTAGACCAAAACTTCAAGTGTCCGAACACATATTTTACGGCGGAAAAGGATTGGGTTTAGCTCCATATGGTGCCTATTGGCGCAATATGAAAAAACTTTGTACTTTGCATCTTTTAAGTGGTTCAAAAGTTGAGATGTTTGCACCTTTGAGAAGTGAGGAAGTGAGGAAGTTATTGAAGTTAGTTGAGAAAGCTGCGACTTTAGGTGAAGTTGTGAATCTTAGTGATATGGCTGGTGAAGTTATAGCGAATATTACTTATAAGATGGTTTTAGGATATAATAAGGATAGCGATTTGGATTTAAAGGGACTTATTCGCGGCGCAATGAATTTGGCTGGAACTTTTAATTTGGCTGATTTTTTGCCTTGGCTAAGCATATTTGATCTTCAGGGATTAACAAGTAGAATGAAGAAAACAAGTAAGGCATTTGACCAAATAGTAGAGAAGATAATCACAGATCATGAGCATGACATGAAAAAAGACACTCACCATAAGGATTTTATAGACATATTACTTTCATTAATGCATCAATCAATGGATCCTAATGATGAAGAACAGAAACATGTCATTGATAGAACTAATATTAAAGCTATTATATTAGATATGATTGGTGGAGCATTAGACTCATCTTCAGCAACAATTGAATGGGCCATGTCCGAACTTTTGAGGCATCCGAATGTGATGAAGAAACTTCAAAATGAACTAGAAAATGTGGTGGGTGTGAATAGCAATGTGAAGGAAAATGACTTTGAAAATTTACCTTATCTTAAAATGGTAATAAAAGAGACATTAAGATTATATCCGGCTGGACCATTGCTAGGACCTCGTGAGTGTCTAAAAGATGTTACAATTGATGGTTATTACATAAAGAAAAATTCTAGGATAATAATTAATGCTTGGGCGTTAGGAAGAGATCCTAATGTTTGGACGAATAATTCTGACATGTTTTATCCAGAGAGATTTGTGAATAGTAATGTAGATCTTCGAGGTCATGATTTTGAACTTATACCATTTGGATCGGGTCGTAGGGGGTGTCCTGGAATTCAACTGGGCCTAAATACTGTTAGGCTTGTTGTGGCCCAATTGGTACATTGCTTTGATTGGAAACTTCCATTTGGCATGTCTTCCAATGACTTGGATATGACCGAGAAATTTGGTCTCTCAATGCCAAGATGTAACGATTTGCTAGCGGTGCCAACAACTCGAAGACAAACATTCGGTATATAG 1518 0.3623 MLPLTLAIPSILFLIFIFILFQSKHHQHNKKHPPGPKPFPIIGSLHILGKLPHRTLQSLAKKHGSIMSLKLGKIPTIIVSSPKSAEQFLKTHDNIFASRPKLQVSEHIFYGGKGLGLAPYGAYWRNMKKLCTLHLLSGSKVEMFAPLRSEEVRKLLKLVEKAATLGEVVNLSDMAGEVIANITYKMVLGYNKDSDLDLKGLIRGAMNLAGTFNLADFLPWLSIFDLQGLTSRMKKTSKAFDQIVEKIITDHEHDMKKDTHHKDFIDILLSLMHQSMDPNDEEQKHVIDRTNIKAIILDMIGGALDSSSATIEWAMSELLRHPNVMKKLQNELENVVGVNSNVKENDFENLPYLKMVIKETLRLYPAGPLLGPRECLKDVTIDGYYIKKNSRIIINAWALGRDPNVWTNNSDMFYPERFVNSNVDLRGHDFELIPFGSGRRGCPGIQLGLNTVRLVVAQLVHCFDWKLPFGMSSNDLDMTEKFGLSMPRCNDLLAVPTTRRQTFGI 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03859 505 Gene3D Cytochrome P450 22 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03859 505 SUPERFAMILY Cytochrome P450 33 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03859 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 435 444 IPR017972 GO:0005506|GO:0016705
Trre4g03859 505 FunFam Cytochrome P450 83B1 19 495 - -
Trre4g03859 505 PANTHER CYTOCHROME P450 93A3-LIKE 10 500 - -
Trre4g03859 505 Coils Coil 325 345 - -
Trre4g03859 505 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03859 505 PRINTS E-class P450 group I signature 84 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03859 505 PRINTS E-class P450 group I signature 354 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03859 505 PRINTS E-class P450 group I signature 432 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03859 505 PRINTS E-class P450 group I signature 442 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03859 505 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03859 505 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03859 505 CDD CYP71-like 62 492 - -
Trre4g03859 505 Pfam Cytochrome P450 33 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03859 505 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03859 505 PRINTS P450 superfamily signature 433 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03859 505 PRINTS P450 superfamily signature 355 366 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03859 Trre-Chr4 46656412 46659018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03859 33 498 Cytochrome P450 AT3G48310 40.213 4.08e-132 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03859 - - gmx:100798918 658.292