Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03848 ATGTTTGCTCCTTTGAGAAAACAAGAAGTTGGATTGTTGATTAAGTCATTAAGAAAATCAGCTTTATTACATGAAATTGTTGATGTTAGCAAGGTTGTAGCTGAGCTTATTGAGAATATCACATATAAAATAATACTGGGTCGAAGCAAAGATGATAGATTCGACTTAAAAGGTCTTGTTCATAAAGAAATTGAATTGATTGGAAAGTTTAATCTCGTTGATTATCTACCTTGGCTACGCCCATTTGATCTTCAGGGAATAGAAAGACAGTGTAAGAAAACATGGAAGAAATGTGACGAATTGTTGGAGCATATAATAAAAGAGCACGAGAATCCATCAATTGAAGAACAAAAAGGTCATCACAACAAAGATTTTGTAGACATATTGTTATCACTCATGAACCAACCAATTGATTCCAAAGACAAAAAATATGACATTGATAGAACAAACATCAAGGCTCTTATACTAGACTTGATTTCAGGAGCAATAGACACAACCTCTGTTGTAACTACATGGGCACTTTCACTACTCCTAAAGCATCCTAATACAATGAAGAGACTTCAACATGAGCTAGAAAATGTTGTTGGAATGAATAGACAAGTAGAAGAGTCCCACTTGGAAAATTTACCTTATTTGTCTATGGTTGTGAAAGAGACCTTTAGGTTGTTCCCTGTTGGACCTTTATTAGCACCTCACGAGTGTGTTCAAGATGTTGTTATGGATGGTTATCACATAAAGAAAAATACAACAATTTTAATAAATATATGGACAATTGGAAGAGATACTAAGATTTGGTCAGATAATGCTGAGATGTTTTCTCCGGAGAGATTTGAAGAGAATAATGTAGACGTTCGCGGACAAGATTATCAACTCTTACCATTTAGTTCAGGTCGAAGACGTTGTCCGGGAATGGAAATGGGATTAACTACTACAAAATTAGTTGTGGCTCAGCTAATACATTGCTTCAATTGGGAGCTTCCAAGTGGTATGTCCCTAGATGATTTAAACATGTCTGAAAAATATGAACTCACAATGCCGAAAAGTCAACCCTTGTTAGCTGTGCCTACCTATCGTTTGATTTCTTAG 1086 0.3536 MFAPLRKQEVGLLIKSLRKSALLHEIVDVSKVVAELIENITYKIILGRSKDDRFDLKGLVHKEIELIGKFNLVDYLPWLRPFDLQGIERQCKKTWKKCDELLEHIIKEHENPSIEEQKGHHNKDFVDILLSLMNQPIDSKDKKYDIDRTNIKALILDLISGAIDTTSVVTTWALSLLLKHPNTMKRLQHELENVVGMNRQVEESHLENLPYLSMVVKETFRLFPVGPLLAPHECVQDVVMDGYHIKKNTTILINIWTIGRDTKIWSDNAEMFSPERFEENNVDVRGQDYQLLPFSSGRRRCPGMEMGLTTTKLVVAQLIHCFNWELPSGMSLDDLNMSEKYELTMPKSQPLLAVPTYRLIS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03848 361 Gene3D Cytochrome P450 1 353 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03848 361 PRINTS P450 superfamily signature 292 301 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03848 361 PRINTS P450 superfamily signature 161 178 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03848 361 PRINTS P450 superfamily signature 214 225 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03848 361 FunFam Uncharacterized protein 16 354 - -
Trre4g03848 361 SUPERFAMILY Cytochrome P450 2 358 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03848 361 Coils Coil 184 204 - -
Trre4g03848 361 PANTHER CYTOCHROME P450 93A3-LIKE 2 359 - -
Trre4g03848 361 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 294 303 IPR017972 GO:0005506|GO:0016705
Trre4g03848 361 Pfam Cytochrome P450 2 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03848 361 PRINTS E-class P450 group I signature 213 231 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03848 361 PRINTS E-class P450 group I signature 170 196 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03848 361 PRINTS E-class P450 group I signature 301 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03848 361 PRINTS E-class P450 group I signature 150 167 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03848 361 PRINTS E-class P450 group I signature 291 301 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre4g03848 361 PRINTS E-class P450 group I signature 254 278 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03848 Trre-Chr4 46433687 46436588 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03848 2 354 Cytochrome P450 AT3G48310 35.311 1.25e-80 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03848 - - gmx:100782715 457.603