Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03806 ATGAATAATACACCATCTAACAACCATACTACTGAGCCTAGGGATGTTGCTAGTTCGAGTTCTAATTCCACCGGAATTAACCTACCACCGAGGAAGGTCTTACCAGACTCGAAGTTTCAACGTGTTTTACATACCCCACTTATGACAGAACCCCCTGGCACATCAATCAATCAAGTAGGTAATAAGTTCTACGAGGTGTTTCAACAAAAACATGGAAGTTATGCTGATCTTCCTGCTGCCAAAATTACGGAACTAATGAAATCATCTAGTTTGGATAATGCTCCTACTCAATCACTTTTGAGTGTTGTGAATGGTATCTTAGAAGAAAGTGTTGAAAGAAGAAATGGAGAAATACCCCTTCGTGTGGCTTGCTTGTTAAGAAAAGTTGTCCAAGAGATTGAGCGGCGTATATCAACGCAGCAAGAACATTTAAGAACGCAAAACAATCTTTTTAAGACTCGCGAAGAAAAATATAAATCAAGAATATCAGTACTTGAGGCTCTTGCATCAGGAACAAAGGAAGAGAGTAAGCTTGTTCTTACAAGTCAACTTCAACAGTTGAAGAATGAGAATATCATAAAGGAAGAAAAAAATGCACATCATGACTCGAAACCGCCAATTGAGAAGATTGTAAAGGAAGAAACGAAAGAAAATGACTCGATACATATCGATAAGATTAAAGATGAGGAAGAAAAGAAAGAAATTGATAAAGAAGTTATTAGATTGATTAAAGAAGTGGAAGATAAAAATTTGGAAAAAAAGGAAATTGATAAAGAAGTTAGTAGATTGATTAAAGAGGTGGATGACAAAAACATGAAAATTTCAACATTGGAGCAAGACTTAGAAACAATTCAAAAAAGATATGAAGTGCAATGCTCAAAGATGGATTCAGAAGCTAAGAATGAAATCGATAAAGAAGTTATTCGATTGAATAAAGAGATCGAGGACAAAAATACGGAAATTTCGACGTTGAAGCAAGACTTAGAAACAATCCAAAAAAGATATGAAGTACAATGCTCAAAGATGGAATCAGAAGCTAAGAATGAAATGGATAAAGAAGTTATTAGATTGAATAAAGAAATGGAAGACAAAAATACGGAAATTTCGACATTGAAGCAAGACTTAGAAACAATTAAAAAAAGTTATGAAGTACAATGTTCAAAGTTGGAATTAGAAGCTAAGGATTCTAAAGGATTGATTAAAGAGATGGAAGATAAAAATATGGAAATTTCAACATTGAAGCAAGAGTTAGAAACAATCAAAAAAAGTTATGAAGCACAATGTTCAAAGTTGGAATCAGAAGTTAAAGATGCTAAAGGAGAATTGAAACAGAAATCACAAGAATATGAGGATTTATTGGAAAAGTTAAGAAATAAGCTTCAAGAGAGTGAAACTTTGACTAAGTTAAAATATGAGAAGTGGAATATGAAACAAAACCTAATGCAAAAAGCTATAAATTTTCAGTTTGGTTCTATACAGCAATTGAAATTGTCTTGGGAATCCATTAAGCAAGATGTTATGAAAGAGCAAACGATTTACTCAGAGGAATGCAAAAGATTTGGTGTAAATCTTAAGCCACTAGTGCATGCAGCTGAGAATTATCATACAATTCTTGCAGAAAACAGAAAATTATTTAATGAACTTCAAGAATTAAAAGGAAATATTAGAGTATATTGTAGAATTAGACCATTTGTACCTGGCCAAAAAGAAAAACAATCTATTGTTGAAAGAATTGGTGAATCAGAGTTGGTTGTAGCAAATCCAAGCAAAAAAGAAGCACTCAAAACATTTAAGTTTAATAAGATCTTTGGCCCTACCTCATCTCAAGCTGAAGTATATGAAGACATACAAGCCTTTATAAGATCAGTACTTGATGGTTATAATGTTTGTATATTTGCTTATGGCCAAACAGGTTCAGGAAAAACTTATACAATGAGTGGTCCAAATAATGCAACTAATGAGAGTGTTGGTGTTAACTATAGAGCTTTAAATGATCTCTTCAACATATCAGCAAGTAGACAAAGCTCCATAGTTTATGAAATTGGAGTTCAAATTATTGAAATATATAACGAACAAGTGCGAGATTTGTTATCAACTGATACCGCTGTCAAAAAATATCCTTTTTTTTCAGTTGATACATACATACCTGATGCTAGTATGCACCCTGTTAAATCAACTGCTGATGTCATAAAGCTAATGGACATTGGTTTGAAAAATAGAGCAAAGAGTTCAACTGCTATGAATGAAAGAAGTAGCCGTTCTCACAGTGTGGTTTCGATTCATGTTCGCGGAGCAGATAAGAAATCTGGTTCGACTCTCGTTGGCAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGATAGATCGGTCTGAAGTAACCGGTGATAGATTAAAGGAAGCACAACATATTAACAAATCATTGTCTGCTCTTGGAGATGTCATTTTTGCCCTTGCTCAAAAGAGTTCTCATATACCATATAGAAACAGCAAGCTCACACAAATTCTGCAAACCGCTCTCGGTGGTCATGCAAAGACACTCATGTTAGTCCAAATTACTTCAGACATAAAGTCTTATTCCGAATCTTTGAGTACTTTGAAGTTTGCTGAGAGGGTTTCTGGAGTTGAGTTAGGAGTTGCAAAAAGTTCAAAAGATGGAAGAGATGTTAGAGAATTAATGGAACAGGTGGCTTCTCTCAAAGATACGATTTCGACAAAAGATGAAGAAATCGAGCGACTACAATTACTTAAGGATCTAAAAAATGTTAATTCTGATAAGCTTGAAGATTAA 2790 0.3405 MNNTPSNNHTTEPRDVASSSSNSTGINLPPRKVLPDSKFQRVLHTPLMTEPPGTSINQVGNKFYEVFQQKHGSYADLPAAKITELMKSSSLDNAPTQSLLSVVNGILEESVERRNGEIPLRVACLLRKVVQEIERRISTQQEHLRTQNNLFKTREEKYKSRISVLEALASGTKEESKLVLTSQLQQLKNENIIKEEKNAHHDSKPPIEKIVKEETKENDSIHIDKIKDEEEKKEIDKEVIRLIKEVEDKNLEKKEIDKEVSRLIKEVDDKNMKISTLEQDLETIQKRYEVQCSKMDSEAKNEIDKEVIRLNKEIEDKNTEISTLKQDLETIQKRYEVQCSKMESEAKNEMDKEVIRLNKEMEDKNTEISTLKQDLETIKKSYEVQCSKLELEAKDSKGLIKEMEDKNMEISTLKQELETIKKSYEAQCSKLESEVKDAKGELKQKSQEYEDLLEKLRNKLQESETLTKLKYEKWNMKQNLMQKAINFQFGSIQQLKLSWESIKQDVMKEQTIYSEECKRFGVNLKPLVHAAENYHTILAENRKLFNELQELKGNIRVYCRIRPFVPGQKEKQSIVERIGESELVVANPSKKEALKTFKFNKIFGPTSSQAEVYEDIQAFIRSVLDGYNVCIFAYGQTGSGKTYTMSGPNNATNESVGVNYRALNDLFNISASRQSSIVYEIGVQIIEIYNEQVRDLLSTDTAVKKYPFFSVDTYIPDASMHPVKSTADVIKLMDIGLKNRAKSSTAMNERSSRSHSVVSIHVRGADKKSGSTLVGNLHLVDLAGSERIDRSEVTGDRLKEAQHINKSLSALGDVIFALAQKSSHIPYRNSKLTQILQTALGGHAKTLMLVQITSDIKSYSESLSTLKFAERVSGVELGVAKSSKDGRDVRELMEQVASLKDTISTKDEEIERLQLLKDLKNVNSDKLED 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03806 929 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein with CH (Calponin Homology) domain 496 706 - -
Trre4g03806 929 Gene3D - 301 343 - -
Trre4g03806 929 Gene3D - 254 296 - -
Trre4g03806 929 Gene3D - 348 390 - -
Trre4g03806 929 Gene3D - 392 432 - -
Trre4g03806 929 SMART kinesin_4 552 883 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre4g03806 929 PANTHER KINESIN-LIKE PROTEIN KLP-3 359 911 IPR027640 GO:0003777|GO:0007018
Trre4g03806 929 Pfam Kinesin motor domain 560 873 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre4g03806 929 Coils Coil 300 345 - -
Trre4g03806 929 ProSiteProfiles Kinesin motor domain profile. 554 875 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre4g03806 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 554 913 IPR027417 -
Trre4g03806 929 Coils Coil 232 287 - -
Trre4g03806 929 Gene3D Kinesin motor domain 497 877 IPR036961 -
Trre4g03806 929 PRINTS Kinesin heavy chain signature 745 762 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre4g03806 929 PRINTS Kinesin heavy chain signature 776 794 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre4g03806 929 PRINTS Kinesin heavy chain signature 825 846 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre4g03806 929 PRINTS Kinesin heavy chain signature 626 647 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre4g03806 929 FunFam Kinesin-related protein3 712 917 - -
Trre4g03806 929 Coils Coil 347 469 - -
Trre4g03806 929 MobiDBLite consensus disorder prediction 1 28 - -
Trre4g03806 929 Coils Coil 889 916 - -
Trre4g03806 929 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03806 Trre-Chr4 45992488 45998409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03806 244 926 Calmodulin-binding Proteins AT5G65930 30.303 9.92e-70 251