Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03800 ATGGAGGAAAATCTACCTCCTGGATTTAGGTTTCATCCAACAGATGAAGAACTCATAACACACTATCTTACAATGAAAATTTCTGATTCTTCATTCACATCAAAAGCTGTTGCAGTTGTTGATCTTAACAAGTCTGAACCTTGGGATCTTCCAGGTAAGGCTTCAATGGGGGAGAAGGAATGGTATTTTTTCAGTGTTAGAGATAGAAAATATCCAACTGGACTTCGAACAAATCGAGCAACTGAATCAGGGTATTGGAAAACCACTGGAAAAGATAAAGAAATATTTCGTGGTGGAATTTTGGTAGGAATGAAGAAAACCCTAGTGTTTTATAAGGGTAGAGCTCCAAGGGGTGAGAAAAGTAATTGGGTCATGCATGAATATAGACTAGAAAACAAACACCACTTTCGAACTTCAAAGGATGAATGGGTGGTTTGTAGGGTTTTTCAAAAGAGCATAGCAACAAAAAAACCACAACAAACATCATCCTCCCAACCAGAATCTCCATGTGACACAACTTCAATGGTGAATGAATTTGGTGATATTGAGCTTCCAAATCTAAATGGTATTACAAATTCATCATCATGTGGATTCACTACATTTAACACTCATGAACTCACTAATAATAATGTTAACACAAATATGAACTTGACAATGAATTGGCCATCTTCAAGTGAAGTTCCATCTCTTCCATGGCCTTCTAACTTGCTTAATCCAAATAATATTTCTGTAAATTCATTGCTTCTAAAAGCATTACAACTTAGGAATTATCAACAACAAAGAGAAGTTGCAACTACAAATCATTTTGTACCATACATGCCTCAACAAGGAGTTATATCTCATCACCTTGGAAATGACTTAAATAATAATTCAAATGATCTAAGTGCTTCTTCTTCAAAAGTTTTAGAATGTATGCCACAACATCAACAAGAGCAACCATTCAATTTGGACTCAATTTGGTGA 963 0.3531 MEENLPPGFRFHPTDEELITHYLTMKISDSSFTSKAVAVVDLNKSEPWDLPGKASMGEKEWYFFSVRDRKYPTGLRTNRATESGYWKTTGKDKEIFRGGILVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHHFRTSKDEWVVCRVFQKSIATKKPQQTSSSQPESPCDTTSMVNEFGDIELPNLNGITNSSSCGFTTFNTHELTNNNVNTNMNLTMNWPSSSEVPSLPWPSNLLNPNNISVNSLLLKALQLRNYQQQREVATTNHFVPYMPQQGVISHHLGNDLNNNSNDLSASSSKVLECMPQHQQEQPFNLDSIW 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03800 320 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 234 - -
Trre4g03800 320 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Trre4g03800 320 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
Trre4g03800 320 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Trre4g03800 320 FunFam NAC domain-containing protein 100-like 14 155 - -
Trre4g03800 320 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03800 Trre-Chr4 45950716 45953164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03800 1 320 NAC Transcription Factor Family AT3G18400 58.702 4.99e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre4g03800 NAM 1.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03800 - - gmx:100787111 452.595