Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03793 ATGAATATGATGCAAAATTTGATGCCTTTTTCTTGTGACAGCATCTTGGAACATCATCAACAACAGGAACATGAGTTGTTTCCAAGAAACTTGGAAGAAAATTTTCATGGTCTTGTTCATCATCATCATCATGTCAATAATCACAATCACAATGCAGTTCAAGTTTCATTTCCAAATTTTCAAGAAGAAAATAAAGTTCATCATGAAGAAAAAAAGAGAAAATTTATGGATTTTCAAGAGACTAGTTCTGCAAATTCAACTCCTGCAGTTTCTGAGAGTGGAAGCAAAACCAAACATAGTGGTGGAAGAGGAAAAAGAGTGAAAAGCTATGAAACAGAAGATCAAGATAAAGCAAAGGAAGTTGTTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATTAATGAGAAATTGAGGTGCTTGCAGAATATTGTTCCTGGATGTTACAAGACCATGGGAATGGCAGTAATGTTGGATGAAATCATAAACTATGTTCAGTCTTTGCAGCATCAAGTAGAGTTTCTTTCTTTGAAACTTACTGCAGCAAGCACTTATTATGACTTCAATTCAGAGACAGATGATTTAGAAACAATGCAGAGAGCAAGGGCATCTGAGGCAAAAGAATTAGCAAGGTATAAGAAAGAAGAATATGGAGGATTTTCATGCTTTCAACCAACATGGCCCCTTTGA 726 0.3581 MNMMQNLMPFSCDSILEHHQQQEHELFPRNLEENFHGLVHHHHHVNNHNHNAVQVSFPNFQEENKVHHEEKKRKFMDFQETSSANSTPAVSESGSKTKHSGGRGKRVKSYETEDQDKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTYYDFNSETDDLETMQRARASEAKELARYKKEEYGGFSCFQPTWPL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03793 241 Gene3D - 130 192 IPR036638 GO:0046983
Trre4g03793 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 180 IPR011598 GO:0046983
Trre4g03793 241 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 52 204 IPR024097 GO:0006355
Trre4g03793 241 MobiDBLite consensus disorder prediction 76 119 - -
Trre4g03793 241 Pfam Helix-loop-helix DNA-binding domain 134 181 IPR011598 GO:0046983
Trre4g03793 241 CDD bHLH_AtBPE_like 120 205 - -
Trre4g03793 241 MobiDBLite consensus disorder prediction 104 119 - -
Trre4g03793 241 MobiDBLite consensus disorder prediction 79 97 - -
Trre4g03793 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 197 IPR036638 GO:0046983
Trre4g03793 241 Coils Coil 207 227 - -
Trre4g03793 241 SMART finulus 136 186 IPR011598 GO:0046983
Trre4g03793 241 FunFam transcription factor BEE 3-like 127 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03793 Trre-Chr4 45841143 45843039 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03793 9 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 52.419 8.63e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre4g03793 HLH 0.00015 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03793 - - gmx:100806942 343.199