Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03792 ATGGCTGAATTCACTGAAAATTTTCAAAATATTATTAGACCCTCTTTTCCTTTTATTGATTCTGATCAAAGCATGGAAATTTTGAATCAATTCATGGAAAATTCAAACATGAATATGATGCAAAATTTGATGCCTTTTTCTTGTGACAGCATCTTGGAACATCATCAACAACAGGAACATGAGTTGTTTCCAAGAAACTTGGAAGAAAATTTTCATGGTCTTGTTCATCATCATCATCATGTCAATAATCACAATCACAATGCAGTTCAAGTTTCATTTCCAAATTTTCAAGAAGAAAATAAAGTTCATCATGAAGAAAAAAAGAGAAAATTTATGGATTTTCAAGAGACTAGTTCTGCAAATTCAACTCCTGCAGTTTCTGAGAGTGGAAGCAAAACCAAACATAGTGGTGGAAGAGGAAAAAGAGTGAAAAGCTATGAAACAGAAGATCAAGATAAAGCAAAGGAAGTTGTTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATTAATGAGAAATTGAGGTGCTTGCAGAATATTGTTCCTGGATGTTACAAGACCATGGGAATGGCAGTAATGTTGGATGAAATCATAAACTATGTTCAGTCTTTGCAGCATCAAGTAGAGTTTCTTTCTTTGAAACTTACTGCAGCAAGCACTTATTATGACTTCAATTCAGAGACAGATGATTTAGAAACAATGCAGAGAGCAAGGGCATCTGAGGCAAAAGAATTAGCAAGGTATAAGAAAGAAGAATATGGAGGATTTTCATGCTTTCAACCAACATGGCCCCTTTGA 834 0.3477 MAEFTENFQNIIRPSFPFIDSDQSMEILNQFMENSNMNMMQNLMPFSCDSILEHHQQQEHELFPRNLEENFHGLVHHHHHVNNHNHNAVQVSFPNFQEENKVHHEEKKRKFMDFQETSSANSTPAVSESGSKTKHSGGRGKRVKSYETEDQDKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTYYDFNSETDDLETMQRARASEAKELARYKKEEYGGFSCFQPTWPL 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03792 277 Pfam Helix-loop-helix DNA-binding domain 170 217 IPR011598 GO:0046983
Trre4g03792 277 Gene3D - 163 234 IPR036638 GO:0046983
Trre4g03792 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 216 IPR011598 GO:0046983
Trre4g03792 277 FunFam transcription factor BEE 3-like 163 234 - -
Trre4g03792 277 MobiDBLite consensus disorder prediction 140 155 - -
Trre4g03792 277 MobiDBLite consensus disorder prediction 115 133 - -
Trre4g03792 277 CDD bHLH_AtBPE_like 156 241 - -
Trre4g03792 277 MobiDBLite consensus disorder prediction 112 155 - -
Trre4g03792 277 SMART finulus 172 222 IPR011598 GO:0046983
Trre4g03792 277 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 66 240 IPR024097 GO:0006355
Trre4g03792 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 233 IPR036638 GO:0046983
Trre4g03792 277 Coils Coil 243 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03792 Trre-Chr4 45841035 45843039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03792 45 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 52.419 7.84e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre4g03792 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03792 - - gmx:100806942 386.726