Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g03789 ATGTTCATCTCCAAATTCTTCTCCTGTTTTCAGAAGTGTCTGAAGAAGCACGGCACTGTCTCCGATGACGACAACGACGACGACAAAGATACCATCGACGCCGTTGATTCTTCTTCAAATCTGTTATTCGAACTTCATACTCTTCAGCTTGCAACCAATTTTTTCTCTGAGCTTAACCAACTTGGTCGTGGAGGCTTTGGTCCTGTTTTCAAGGGATTGATGCCAAATGGTGAAGAAGTGGCAATTAAAAAGCTGTCATTGGAATCTAGACAAGGAATTCGTGAATTTATGAACGAAGTTCGGCTATTACTAAGAATCCAGCACAAGAATTTAGTCACTTTACTAGGTTGTTGTGCAGAAGGACCAGAAAAGATGCTTGTCTACGAATATCTACCAAACAAAAGCCTTGACCACTTTCTATTTGATAAAAAGAGGTCCTTGGATTGGACGACACGTTTTAAAATAATTACCGGTGTGGCAAGAGGACTTCTCTACCTGCACGAAGAGGCCCCGGAAAGGATTATTCACAGAGACATTAAAGCTAGTAACATATTGCTAGACGAGAAATTAAATCCGAAAATTTCAGACTTTGGTTTGGCAAGACTGTTTCCTGGAGAGGATACTCATGTGCAAACATTTAGGATTTCCGGTACACATGGTTACATGGCTCCTGAATATGCAATGCGTGGATATCTTTCTGTAAAGACTGATGTTTTCAGCTATGGAGTGTTGGTGTTGGAAATAGTTAGCGGGAGAAAAAACCACGATGTGAAGCTTGGTTCTGAAAAGGCAGATCTCCTAAGCTATGCATGGAAGCTTTATCAAGGAGGGAAAATTATGGATTTAATAGACCAAAGCATAGGTAAATACAACGGCGACGAGGCAGCAATGTGCATTCAGCTAGGTTTACTATGTTGTCAAGCAAGTATAGTAGAAAGACCAGACATGAATTCAGTTCATCTTATGCTATCAAGTGATTCATTCACATTGCCAAGACCAAGTAAACCCGGAATTCAGGGTCGTGTAGGAAAATGGAATACAACTAGTACTTCTGCTTTGACAAATACTAATGCTAGTAGTGCAACAAGAGCTTCTGGTGGTAGTAGTTTTGTAGAGGATTATTCTAGAAATTCTATTTCTACTTCTTCTTTTGATGAAGGTAGATAG 1167 0.4002 MFISKFFSCFQKCLKKHGTVSDDDNDDDKDTIDAVDSSSNLLFELHTLQLATNFFSELNQLGRGGFGPVFKGLMPNGEEVAIKKLSLESRQGIREFMNEVRLLLRIQHKNLVTLLGCCAEGPEKMLVYEYLPNKSLDHFLFDKKRSLDWTTRFKIITGVARGLLYLHEEAPERIIHRDIKASNILLDEKLNPKISDFGLARLFPGEDTHVQTFRISGTHGYMAPEYAMRGYLSVKTDVFSYGVLVLEIVSGRKNHDVKLGSEKADLLSYAWKLYQGGKIMDLIDQSIGKYNGDEAAMCIQLGLLCCQASIVERPDMNSVHLMLSSDSFTLPRPSKPGIQGRVGKWNTTSTSALTNTNASSATRASGGSSFVEDYSRNSISTSSFDEGR 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g03789 388 MobiDBLite consensus disorder prediction 332 388 - -
Trre4g03789 388 Gene3D Transferase(Phosphotransferase) domain 1 131 329 - -
Trre4g03789 388 SUPERFAMILY Protein kinase-like (PK-like) 43 336 IPR011009 -
Trre4g03789 388 MobiDBLite consensus disorder prediction 341 388 - -
Trre4g03789 388 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 382 - -
Trre4g03789 388 Gene3D Phosphorylase Kinase; domain 1 17 130 - -
Trre4g03789 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Trre4g03789 388 CDD STKc_IRAK 61 323 - -
Trre4g03789 388 FunFam Cysteine-rich receptor-like protein kinase 41 131 329 - -
Trre4g03789 388 FunFam Cysteine-rich receptor-like protein kinase 2 22 130 - -
Trre4g03789 388 Pfam Protein tyrosine and serine/threonine kinase 58 264 IPR001245 GO:0004672|GO:0006468
Trre4g03789 388 ProSiteProfiles Protein kinase domain profile. 55 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g03789 388 SMART serkin_6 55 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g03789 Trre-Chr4 45815126 45818535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g03789 1 355 Receptor kinase-like Gene Family AT4G23150 48.333 5.89e-111 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre4g03789 PK_Tyr_Ser-Thr 6.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g03789 - - tpra:123884781 721.465